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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Inflammatory skin disease Uncombable hair syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGM3(6)
0.013 0.333 1.47e-2 1.64e-2 ✓ sig. —
Hypogonadism Rotor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLCO1B1(4)
0.013 0.333 1.47e-2 1.64e-2 ✓ sig. —
Cervical cancer severe combined immunodeficiency due to CD70 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD70(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
dyskeratosis congenita and related telomere biology disorder Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RPA1(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Adult-onset proximal spinal muscular atrophy Cervical cancer
1 gene
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1 of 1 corroborated by 2+ sources
VAPB(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
amyotrophic lateral sclerosis type 8 Cervical cancer
1 gene
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1 of 1 corroborated by 2+ sources
VAPB(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Cervical cancer macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDC42(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
meier-gorlin syndrome 5 Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDC6(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Microscopic polyangiitis Polycystic ovary syndrome
1 gene
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CDH19(1)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
neurodevelopmental disorder with hypotonia, neuropathy, and deafness Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN4(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
neurodevelopmental disorder with or without variable brain abnormalities; NEDBA Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Ovarian teratoma Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BMP15(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
cardiomyopathy, dilated, 2g Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LMOD2(2)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Congenital lipoid adrenal hyperplasia Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAR(5)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
immunodeficiency 126, susceptibility to Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTCRA(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
immunodeficiency-centromeric instability-facial anomalies syndrome 4 Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HELLS(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
hermansky-pudlak syndrome 8 Polycystic ovary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BLOC1S3(3)
0.004 1.000 1.47e-2 1.64e-2 ✓ sig. —
Diffuse large b-cell lymphoma Treacher collins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLR1D(8)
0.016 0.250 1.47e-2 1.64e-2 ✓ sig. —
Chromosomal disorder Diffuse large b-cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
IMMP2L(2)
0.016 0.250 1.47e-2 1.64e-2 ✓ sig. —
Cerebral atherosclerosis Periodontal disease
1 gene
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1 of 1 corroborated by 2+ sources
KALRN(2)
0.032 0.083 1.47e-2 1.63e-2 ✓ sig. —
Myoadenylate deaminase deficiency Myopathy
1 gene
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1 of 1 corroborated by 2+ sources
AMPD1(2)
0.009 0.500 1.45e-2 1.61e-2 ✓ sig. —
Chondromalacia Diverticulitis
1 gene
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0.028 0.125 1.45e-2 1.61e-2 ✓ sig. —
Dyslexia Male infertility acephalic spermatozoa
1 gene
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1 of 1 corroborated by 2+ sources
PMFBP1(2)
0.009 0.500 1.44e-2 1.60e-2 ✓ sig. Cluster 179 →
Keratoconus Malonic aciduria
1 gene
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1 of 1 corroborated by 2+ sources
MLYCD(8)
0.009 0.500 1.44e-2 1.60e-2 ✓ sig. —
Ataxia, spastic, autosomal recessive Keratoconus
1 gene
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1 of 1 corroborated by 2+ sources
KIF1C(3)
0.009 0.500 1.44e-2 1.60e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.