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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Neuroocular syndrome Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
PRR12(5)
0.008 0.500 1.66e-2 1.82e-2 ✓ sig. Cluster 25 →
extraoral halitosis due to methanethiol oxidase deficiency Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. Cluster 5 →
Lung neoplasms Rufous oculocutaneous albinism
1 gene
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TYRP1(1)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms SMARCC1-associated developmental dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMARCC1(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms Prader-willi-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CPE(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms Pulmonary agenesis
1 gene
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1 of 1 corroborated by 2+ sources
EFNB2(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. Cluster 5 →
Lung neoplasms mucopolysaccharidosis type 2
1 gene
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1 of 1 corroborated by 2+ sources
IDS(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Congenital scalp aplasia cutis-enamel hypoplasia-developmental delay-intellectual disability syndrome Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Corpus callosum agenesis with intellectual disability, coloboma, micrognathia Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IGBP1(5)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Corpus callosum agenesis with intellectual disability, ocular coloboma, micrognathia Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IGBP1(3)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Aplasia cutis-enamel dysplasia syndrome Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(5)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms Urinary tract obstruction
1 gene
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1 of 1 corroborated by 2+ sources
RIOX2(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms xeroderma pigmentosum group C
1 gene
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1 of 1 corroborated by 2+ sources
XPC(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Anorexia nervosa pseudohypoaldosteronism type 2E
1 gene
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1 of 1 corroborated by 2+ sources
CUL3(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
Anorexia nervosa psychomotor regression-oculomotor apraxia-movement disorder-nephropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A9(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
Kidney failure RD3-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RD3(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
Anorexia nervosa neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
SHMT2(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. Cluster 69 →
Anorexia nervosa jalili syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CNNM4(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
Anorexia nervosa KIZ-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
KIZ(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
Anorexia nervosa short chain acyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACADS(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
Anorexia nervosa focal segmental glomerulosclerosis and neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM8(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
Beta-ketothiolase deficiency Kidney failure
1 gene
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1 of 1 corroborated by 2+ sources
ACAT1(5)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
A4GALT-congenital disorder of glycosylation Kidney failure
1 gene
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1 of 1 corroborated by 2+ sources
A4GALT(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
Acromelic frontonasal dysostosis Anorexia nervosa
1 gene
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1 of 1 corroborated by 2+ sources
ZSWIM6(2)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —
Amaurosis hypertrichosis Anorexia nervosa
1 gene
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1 of 1 corroborated by 2+ sources
CNNM4(3)
0.004 1.000 1.63e-2 1.79e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.