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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Carnitine palmitoyltransferase deficiency Myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CPT2(8)
0.009 0.333 2.17e-2 2.35e-2 ✓ sig. —
multiple acyl-CoA dehydrogenase deficiency Myopathy
1 gene
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1 of 1 corroborated by 2+ sources
ETFDH(2)
0.009 0.333 2.17e-2 2.35e-2 ✓ sig. —
Cerebral atherosclerosis Oral cavity carcinoma
1 gene
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ZDHHC21(1)
0.025 0.083 2.16e-2 2.34e-2 ✓ sig. —
Central vertigo Meniere disease
1 gene
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1 of 1 corroborated by 2+ sources
OTOGL(2)
0.014 0.200 2.16e-2 2.34e-2 ✓ sig. —
Meniere disease Peripheral vertigo
1 gene
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1 of 1 corroborated by 2+ sources
OTOGL(2)
0.014 0.200 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis ciliary dyskinesia, primary, 46
1 gene
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1 of 1 corroborated by 2+ sources
STK36(2)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis Copper metabolism disorder
1 gene
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CCS(1)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis neuropathy, hereditary sensory and autonomic, type 1A
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC1(6)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis neuropathy, hereditary sensory and autonomic, type 1C
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC2(3)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis obsolete hyperinsulinism due to short chain 3-hydroxylacyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADH(2)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis frontotemporal dementia and/or amyotrophic lateral sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
GRN(2)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis frontotemporal dementia and/or amyotrophic lateral sclerosis 2
1 gene
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1 of 1 corroborated by 2+ sources
CHCHD10(4)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis frontotemporal dementia and/or amyotrophic lateral sclerosis 7
1 gene
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1 of 1 corroborated by 2+ sources
CHMP2B(6)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis Arthrogryposis with anterior horn cell disease
1 gene
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1 of 1 corroborated by 2+ sources
GLE1(4)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis Bilateral congenital vertical talus
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(2)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis hereditary spastic paraplegia 11
1 gene
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1 of 1 corroborated by 2+ sources
SPG11(8)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis hereditary spastic paraplegia 62
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN1(2)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis T-B+ severe combined immunodeficiency due to JAK3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
JAK3(3)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis Telangiectasia–intellectual disability–microcephaly–metaphyseal dysplasia–eye abnormalities–short stature syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRRC8C(3)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. Cluster 15 →
Amyotrophic lateral sclerosis inclusion body myopathy with early-onset paget disease with or without frontotemporal dementia 2
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis Intellectual developmental disorder dysmorphic skeletal
1 gene
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1 of 1 corroborated by 2+ sources
CNOT2(4)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis Intellectual developmental disorder dysmorphic speech skeletal
1 gene
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1 of 1 corroborated by 2+ sources
CNOT2(2)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis Intellectual developmental disorder speech ambulation
1 gene
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1 of 1 corroborated by 2+ sources
ACTL6B(4)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis distal myopathy with vocal cord weakness
1 gene
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1 of 1 corroborated by 2+ sources
MATR3(6)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —
Amyotrophic lateral sclerosis Dworschak-punetha neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PLXNA1(5)
0.003 1.000 2.16e-2 2.34e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.