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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
mucopolysaccharidosis type 3C Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
HGSNAT(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
CEP164-related ciliopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
CEP164(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Cerebellar dysfunction, impaired intellectual development, and hypogonadotropic hypogonadism Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PRDM13(5)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
CNGB1-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
CNGB1(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Costeff optic atrophy syndrome Retinitis pigmentosa
1 gene
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OPA3(1)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Deafness dystonia syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
TIMM8A(4)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Deafness, encephaloneuropathy, obesity, valvulopathy syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PDSS1(4)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa retinitis pigmentosa 18
1 gene
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1 of 1 corroborated by 2+ sources
PRPF3(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa retinitis pigmentosa 27
1 gene
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1 of 1 corroborated by 2+ sources
NRL(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa retinitis pigmentosa 86
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa retinitis pigmentosa 9
1 gene
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1 of 1 corroborated by 2+ sources
RP9(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa Retinitis pigmentosa and erythrocytic microcytosis
1 gene
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1 of 1 corroborated by 2+ sources
TRNT1(5)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa Retinitis pigmentosa with or without situs inversus
1 gene
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1 of 1 corroborated by 2+ sources
ARL2BP(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa Retinitis pigmentosa, hearing loss, premature aging, short stature, facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXOSC2(5)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa Sideroblastic anemia with b-cell immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRNT1(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa snowflake vitreoretinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ13(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa SNRNP200-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa spondylometaphyseal dysplasia-cone-rod dystrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCYT1A(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa SRD5A3-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
SRD5A3(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
IMPDH1-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
IMPDH1(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
IMPG2-related recessive retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
IMPG2(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
jalili syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
CNNM4(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
PCARE-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PCARE(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
PDE6A-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PDE6A(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
PDE6G-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PDE6G(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.