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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
hypomyelinating leukodystrophy 13 Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
HIKESHI(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Neurotic disorder Partial hypoxanthine-guanine phosphoribosyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HPRT1(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Neurotic disorder psychomotor regression-oculomotor apraxia-movement disorder-nephropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A9(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Desmosterolosis Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
DHCR24(8)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
dilated cardiomyopathy 1V Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
PSEN2(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Al kaissi syndrome Melanoma
1 gene
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CDK10(1)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
amyotrophic lateral sclerosis type 15 Neurotic disorder
1 gene
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1 of 1 corroborated by 2+ sources
UBQLN2(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Birk-landau-perez syndrome Neurotic disorder
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A9(3)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Blepharophimosis intellectual disability syndrome Neurotic disorder
1 gene
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1 of 1 corroborated by 2+ sources
UBE3B(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Congenital primary lymphedema of gordon Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
VEGFC(3)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Cystathioninuria Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
CTH(7)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Melanoma Rufous oculocutaneous albinism
1 gene
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1 of 1 corroborated by 2+ sources
TYRP1(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Melanoma Short telomere syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACD(3)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Melanoma Spastic ataxia optic atrophy dysarthria syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MTPAP(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Neurotic disorder syndromic multisystem autoimmune disease due to ITCH deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ITCH(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Autosomal recessive hypomyelinating leukodystrophy Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
HIKESHI(4)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
autosomal recessive optic atrophy, OPA7 type Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Gastric cancer Sarcoglycanopathies
1 gene
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1 of 1 corroborated by 2+ sources
SGCG(2)
0.005 0.500 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease Salt and pepper developmental regression syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease primary ciliary dyskinesia 23
1 gene
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1 of 1 corroborated by 2+ sources
ODAD2(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease Midline facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
PCSK7(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease glycogen storage disease due to muscle and heart glycogen synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GYS1(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease GM3 synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease hyperphosphatasia with intellectual disability syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
PGAP3(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease Osteomalacia
1 gene
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1 of 1 corroborated by 2+ sources
MEPE(3)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.