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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Chronic infantile diarrhea due to guanylate cyclase 2c overactivity Congenital diarrhea
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2C(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 172 →
Arachnodactyly Ck syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NSDHL(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 381 →
Coach syndrome Rhyns syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TMEM67(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 306 →
Coach syndrome joubert syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
INPP5E(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Coach syndrome MORM syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INPP5E(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Coach syndrome OFD1-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
OFD1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Bilateral microtia with deafness and cleft palate syndrome Congenital small ears
1 gene
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1 of 1 corroborated by 2+ sources
HOXA2(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Birdshot chorioretinopathy Carbamazepine hypersensitivity
1 gene
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1 of 1 corroborated by 2+ sources
HLA-B(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 277 →
Birdshot chorioretinopathy Thrombophlebitis
1 gene
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HLA-B(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 277 →
Birdshot chorioretinopathy Paraparesis
1 gene
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1 of 1 corroborated by 2+ sources
TECPR2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 277 →
Blau syndrome Bronchiolitis obliterans
1 gene
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1 of 1 corroborated by 2+ sources
NOD2(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 382 →
bleeding disorder, platelet-type, 21 Skeletal ewing sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
FLI1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 309 →
Bmp4-related ocular growth disorder Vitamin a deficiency
1 gene
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1 of 1 corroborated by 2+ sources
BMP4(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 24 →
Bosma arhinia microphthalmia syndrome Facioscapulohumeral muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SMCHD1(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 313 →
Brain small vessel disease Familial hematuria-retinal arteriolar tortuosity-contractures syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A1(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Brain-lung-thyroid syndrome Hereditary ataxia
1 gene
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1 of 1 corroborated by 2+ sources
NKX2-1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Branchial arch abnormalities syndrome Choanal atresia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KMT2D(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 144 →
Branchial arch abnormalities syndrome Congenital small ears
1 gene
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1 of 1 corroborated by 2+ sources
KMT2D(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Branchial cleft anomalies Choanal atresia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KMT2D(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 144 →
Branchial cleft anomalies Congenital small ears
1 gene
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KMT2D(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
BRCA1-related cancer predisposition Hereditary breast-ovarian cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRCA1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
BRCA2-related cancer predisposition Hereditary breast-ovarian cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRCA2(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
BRCA2-related cancer predisposition Bronchus cancer
1 gene
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1 of 1 corroborated by 2+ sources
BRCA2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
BRCA2-related cancer predisposition Chordoma
1 gene
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1 of 1 corroborated by 2+ sources
BRCA2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
BRCA2-related cancer predisposition Respiratory system cancer
1 gene
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1 of 1 corroborated by 2+ sources
BRCA2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.