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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Exanthema Thrombophlebitis
1 gene
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1 of 1 corroborated by 2+ sources
HLA-B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Exanthema Sclerosis
1 gene
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IL1RN(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 216 →
Eyelid disease Lymphedema-distichiasis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXC2(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Eyelid disease Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus
1 gene
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FOXC2(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
EYS-related retinopathy Retinitis punctata albescens
1 gene
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1 of 1 corroborated by 2+ sources
EYS(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cold autoinflammatory syndrome Factor xii deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F12(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
familial hemiplegic migraine Focal onset epileptic seizure
1 gene
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1 of 1 corroborated by 2+ sources
SCN1A(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Fanconi anemia complementation group A Renal pelvis neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FANCA(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Breast implant-associated anaplastic large cell lymphoma fanconi anemia, complementation group s
1 gene
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1 of 1 corroborated by 2+ sources
BRCA1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Focal onset epileptic seizure intellectual disability, autosomal dominant 42
1 gene
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1 of 1 corroborated by 2+ sources
GNB1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 273 →
Adenomatous polyposis Folic acid deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DHFR(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
Contracture of multiple joints Fowler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Axenfeld-rieger syndrome FOXC1-related anterior segment dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
FOXC1(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 253 →
free sialic acid storage disease Gitelman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC17A5(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Arginine vasopressin deficiency Gastrointestinal hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
AVP(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Gastrointestinal hemorrhage Hereditary arginine vasopressin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
AVP(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Brain tumor-polyposis syndrome Gastrointestinal hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
APC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
Familial adenomatous polyposis Gastrointestinal hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
APC(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
gastric adenocarcinoma and proximal polyposis of the stomach Gastrointestinal hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
APC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
Gata2 deficiency Vascular remodeling
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 136 →
Genetic renal tubular disease Gitelman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Gitelman syndrome mucopolysaccharidosis type 1
1 gene
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1 of 1 corroborated by 2+ sources
IDUA(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Gitelman syndrome neonatal severe primary hyperparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
CASR(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Gitelman syndrome Hypokalemia-hypomagnesemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
glaucoma 3, primary congenital, d Hydrophthalmos
1 gene
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1 of 1 corroborated by 2+ sources
LTBP2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.