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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hyperammonemia interstitial lung disease due to ABCA3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 408 →
Intestinal cancer Paraganglioma
1 gene
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1 of 1 corroborated by 2+ sources
SDHD(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 81 →
Intestinal cancer Pheochromocytoma/paraganglioma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SDHD(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 81 →
hereditary nonpolyposis colon cancer karyomegalic interstitial nephritis
1 gene
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FAN1(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Krabbe disease due to saposin A deficiency Metachromatic leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PSAP(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 118 →
Rosacea Toxic epidermal necrolysis
2 genes
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IKZF1(1), SPMIP7(1)
0.040 0.143 5.02e-4 1.06e-3 ✓ sig. —
Brachydactyly Uterine polyp
2 genes
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2 of 2 corroborated by 2+ sources
BMPR1B(7), TRPS1(2)
0.045 0.095 4.80e-4 1.03e-3 ✓ sig. —
Crest syndrome Mixed connective tissue disease
2 genes
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1 of 2 corroborated by 2+ sources
FBN1(1), HLA-DRB1(2)
0.045 0.095 4.80e-4 1.03e-3 ✓ sig. —
Language development disorders Specific language disorder
2 genes
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2 of 2 corroborated by 2+ sources
CNTNAP2(2), FOXP2(4)
0.045 0.105 4.61e-4 9.85e-4 ✓ sig. Cluster 179 →
Bell's palsy Peritoneal disease
2 genes
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DISC1(1), ERBB4(1)
0.031 0.222 4.60e-4 9.84e-4 ✓ sig. —
Arima syndrome CEP290-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
CEP290(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Arima syndrome joubert syndrome 14
1 gene
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1 of 1 corroborated by 2+ sources
TMEM237(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
arrhythmogenic right ventricular dysplasia 5 Emery-dreifuss muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TMEM43(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 65 →
arthrogryposis multiplex congenita 3, myogenic type Emery-dreifuss muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYNE1(7)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Arthrogryposis with ectodermal dysplasia Pendred syndrome
1 gene
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OTOF(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Arthrogryposis with perthes disease and gaze palsy Congenital deformity of clavicle
1 gene
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1 of 1 corroborated by 2+ sources
NEK9(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
Arthrogryposis with perthes disease and gaze palsy Congenital deformity of elbow
1 gene
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1 of 1 corroborated by 2+ sources
NEK9(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
Arthrogryposis with perthes disease and gaze palsy Congenital deformity of forearm
1 gene
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1 of 1 corroborated by 2+ sources
NEK9(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
Arthrogryposis with perthes disease and gaze palsy Congenital deformity of scapula
1 gene
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1 of 1 corroborated by 2+ sources
NEK9(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
Arthrogryposis with perthes disease and gaze palsy Congenital deformity of wrist
1 gene
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1 of 1 corroborated by 2+ sources
NEK9(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
Astigmatism kbg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Astigmatism Christianson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC9A6(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Astigmatism Neurodegenerative disorder, x-linked, female-restricted, with parkinsonism and cognitive impairment
1 gene
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1 of 1 corroborated by 2+ sources
SLC9A6(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Ateleiotic dwarfism Bonnevie-ullrich syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GH1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
atransferrinemia Hereditary hemochromatosis
1 gene
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1 of 1 corroborated by 2+ sources
TF(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.