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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Microcephaly Tessadori-van haaften neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
H4C3(5)
0.009 0.167 4.06e-2 4.25e-2 ✓ sig. —
hand-foot-genital syndrome Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
HOXA13(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
immunodeficiency, common variable, 14 Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BP2(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Kindler epidermolysis bullosa Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
kindler syndrome Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Ulcerative colitis Uterine bilocularis
1 gene
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1 of 1 corroborated by 2+ sources
HOXA13(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
congenital disorder of glycosylation, type IIq Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
COG2(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
DPH5(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. Cluster 28 →
phosphohydroxylysinuria Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
PHYKPL(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Cystathioninuria Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
CTH(6)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Chromosome 16p11.2 microdeletion syndrome Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
SH2B1(3)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
ehlers-danlos syndrome, musculocontractural type 2 Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
DSE(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
ALG11-congenital disorder of glycosylation Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
ALG11(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Alys amyloidosis Ulcerative colitis
1 gene
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LYZ(1)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
3-hydroxyisobutyryl-coa hydrolase deficiency Glioblastoma
1 gene
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1 of 1 corroborated by 2+ sources
HIBCH(3)
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. —
Glioblastoma Rin2 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIN2(5)
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. —
Glioblastoma Sarcosinemia
1 gene
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1 of 1 corroborated by 2+ sources
SARDH(7)
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. —
Glioblastoma systemic lupus erythematosus 18
1 gene
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1 of 1 corroborated by 2+ sources
PLD4(2)
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. Cluster 284 →
Glioblastoma leukodystrophy, hypomyelinating, 14
1 gene
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1 of 1 corroborated by 2+ sources
UFM1(2)
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. —
Glioblastoma Microscopic polyangiitis
1 gene
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CDH19(1)
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. —
Glioblastoma thrombocytopenia 11 with multiple congenital anomalies and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
RAP1B(2)
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. Cluster 284 →
Giant cell tumor of bone Glioblastoma
1 gene
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H3-3A(1)
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. —
Glioblastoma ornithine aminotransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
OAT(2)
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. —
Cataract-microcornea-metabolic syndrome Glioblastoma
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 3.94e-2 4.13e-2 ✓ sig. —
Ankle fracture Uterine fibroid
1 gene
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CPED1(1)
0.003 0.500 3.94e-2 4.12e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.