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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
immunodeficiency 18 Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
CD3E(3)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Intellectual developmental disorder seizures movement Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
PDE2A(4)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
VARS1(2)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis systemic lupus erythematosus 18
1 gene
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1 of 1 corroborated by 2+ sources
PLD4(4)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis TELO2-related intellectual disability-neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
TELO2(2)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Central centrifugal cicatricial alopecia Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
PADI3(2)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis Thrombocytopenia with anemia and myelofibrosis
1 gene
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1 of 1 corroborated by 2+ sources
MPIG6B(6)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis X-linked ichthyosis with steryl-sulfatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STS(3)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis You-hoover-fong syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TELO2(3)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
colobomatous microphthalmia-rhizomelic dysplasia syndrome Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MAB21L2(3)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Amyotrophic lateral sclerosis Oculopharyngeal muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.003 0.500 4.27e-2 4.44e-2 ✓ sig. —
Central nervous system cancer neurodevelopmental disorder with or without seizures and gait abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
GRIA4(2)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. —
Central nervous system cancer ornithine aminotransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
OAT(2)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. —
Central nervous system cancer leukodystrophy, hypomyelinating, 14
1 gene
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1 of 1 corroborated by 2+ sources
UFM1(2)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. —
Central nervous system cancer Microscopic polyangiitis
1 gene
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CDH19(1)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. —
Central nervous system cancer thrombocytopenia 11 with multiple congenital anomalies and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
RAP1B(2)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. Cluster 284 →
Cataract-microcornea-metabolic syndrome Central nervous system cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. —
Central nervous system cancer Rin2 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIN2(5)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. —
Central nervous system cancer Sarcosinemia
1 gene
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1 of 1 corroborated by 2+ sources
SARDH(7)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. —
Central nervous system cancer systemic lupus erythematosus 18
1 gene
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1 of 1 corroborated by 2+ sources
PLD4(2)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. Cluster 284 →
Hydatidiform mole Keratoconus
1 gene
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KIR3DL1(1)
0.009 0.167 4.25e-2 4.43e-2 ✓ sig. —
Hoxha-aliu syndrome Systemic lupus erythematosus
1 gene
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1 of 1 corroborated by 2+ sources
ERI1(4)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Systemic lupus erythematosus systemic lupus erythematosus 17
1 gene
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1 of 1 corroborated by 2+ sources
TLR7(7)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Systemic lupus erythematosus systemic lupus erythematosus 18
1 gene
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1 of 1 corroborated by 2+ sources
PLD4(2)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —
Systemic lupus erythematosus systemic lupus erythematosus, susceptibility to, 1
1 gene
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1 of 1 corroborated by 2+ sources
TLR5(5)
0.002 1.000 4.25e-2 4.43e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.