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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hyperparathyroidism Osteolysis, hereditary, of carpal bones with or without nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
MAFB(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hemoglobin high altitude adaptation Polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
EGLN1(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hemoglobinopathy toms river Secondary malignant neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
HBG2(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hepatic lipase deficiency Pericarditis
1 gene
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1 of 1 corroborated by 2+ sources
LIPC(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Blepharoptosis hereditary peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
IGHMBP2(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy hereditary sensory and autonomic neuropathy type 4
1 gene
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1 of 1 corroborated by 2+ sources
NTRK1(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Hereditary sensory and autonomic neuropathy hereditary sensory and autonomic neuropathy type 6
1 gene
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1 of 1 corroborated by 2+ sources
DST(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy Hereditary sensory and autonomic neuropathy with spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
CCT5(5)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Burkitt lymphoma hereditary thrombocytopenia and hematologic cancer predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RUNX1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
high myopia-sensorineural deafness syndrome Marshall syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
holocarboxylase synthetase deficiency Specific language disorder
1 gene
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1 of 1 corroborated by 2+ sources
HLCS(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 179 →
Hyperparathyroidism hyperparathyroidism 2 with jaw tumors
1 gene
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1 of 1 corroborated by 2+ sources
CDC73(8)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma hypoparathyroidism-deafness-renal disease syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA3(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy Retinopathy-sensory neuropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy Riley-day syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ELP1(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Marshall syndrome snowflake vitreoretinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ13(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Marshall syndrome Stickler syndrome, type 4
1 gene
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1 of 1 corroborated by 2+ sources
COL9A1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 248 →
Amyloidosis Congenital plasminogen activator inhibitor deficiency type 1
1 gene
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1 of 1 corroborated by 2+ sources
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Specific language disorder
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 179 →
Deafness and myopia Marshall syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
familial meningioma Periodontal disease
1 gene
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1 of 1 corroborated by 2+ sources
SMARCE1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
fanconi anemia complementation group g Mouth disease
1 gene
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1 of 1 corroborated by 2+ sources
FANCG(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Farber disease Lipidoses
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Farber disease Lipoidosis
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
FLVCR1-related retinopathy with or without ataxia Hereditary sensory and autonomic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.