Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Oocyte maturation defect Partial corpus callosum agenesis
1 gene
Show details
1 of 1 corroborated by 2+ sources
KPNA7(5)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
OPA1-related optic atrophy with or without extraocular features Ventricular remodeling
1 gene
Show details
1 of 1 corroborated by 2+ sources
OPA1(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Night blindness, congenital stationary retinitis pigmentosa 47
1 gene
Show details
1 of 1 corroborated by 2+ sources
SAG(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 151 →
Right hypoplastic heart syndrome Ventricular remodeling
1 gene
Show details
1 of 1 corroborated by 2+ sources
TBX20(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Night blindness, congenital stationary RLBP1-related retinopathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
RLBP1(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Short stature spectrum Spondyloepimetaphyseal dysplasia
1 gene
Show details
1 of 1 corroborated by 2+ sources
ACAN(7)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 211 →
Spondyloepimetaphyseal dysplasia spondyloepimetaphyseal dysplasia with joint laxity, type 3
1 gene
Show details
1 of 1 corroborated by 2+ sources
EXOC6B(5)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 211 →
Spondyloepimetaphyseal dysplasia spondyloepimetaphyseal dysplasia-short limb-abnormal calcification syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
DDR2(5)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Spondyloepimetaphyseal dysplasia spondyloepimetaphyseal dysplasia, genevieve type
1 gene
Show details
1 of 1 corroborated by 2+ sources
NANS(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 211 →
Bilateral parasagittal parieto-occipital polymicrogyria Polymicrogyria
1 gene
Show details
1 of 1 corroborated by 2+ sources
FIG4(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Bothnia retinal dystrophy Night blindness, congenital stationary
1 gene
Show details
1 of 1 corroborated by 2+ sources
RLBP1(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Boudin-mortier syndrome Chagas cardiomyopathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
NPR3(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Bowen’s disease Intestinal polyps
1 gene
Show details
CCND1(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
autosomal recessive primary microcephaly Congenital malformation syndromes associated with short stature
1 gene
Show details
1 of 1 corroborated by 2+ sources
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Cerebral cortical atrophy Proximal spinal muscular atrophy
1 gene
Show details
SPG7(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. Cluster 333 →
Ovarian mucinous adenocarcinoma Testotoxicosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
INHBB(3)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Disorders of sex development Testotoxicosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
LHCGR(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Cleft lip and cleft of alveolar process of maxilla Van der woude syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
IRF6(7)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Gastrointestinal hemorrhage Waldenstrom macroglobulinemia
1 gene
Show details
1 of 1 corroborated by 2+ sources
IRF4(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Adenomatous polyposis Xanthinuria
1 gene
Show details
TSC2(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Tuberous sclerosis complex Xanthinuria
1 gene
Show details
1 of 1 corroborated by 2+ sources
TSC2(7)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. Cluster 70 →
Disorders of sex development Male pseudohypopituitarism
1 gene
Show details
1 of 1 corroborated by 2+ sources
AKR1C2(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. Cluster 344 →
Ductus arteriosus, patent Intestinal pseudo-obstruction
1 gene
Show details
1 of 1 corroborated by 2+ sources
TFAP2B(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Carotid artery thrombosis Hereditary hemophagocytic lymphohistiocytosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
STXBP2(3)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Congenital hyperinsulinism Intestinal disaccharide malabsorption
1 gene
Show details
1 of 1 corroborated by 2+ sources
GCK(3)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.