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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
skeletal dysplasia, mild, with joint laxity and advanced bone age Vesicoureteral reflux
1 gene
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1 of 1 corroborated by 2+ sources
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Cone dystrophy SRD5A3-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
SRD5A3(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Dermatitis Systemic primary carnitine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A5(4)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
CERKL-related retinopathy Cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CERKL(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 7 →
Cernunnos-XLF deficiency Microphthalmia
1 gene
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1 of 1 corroborated by 2+ sources
NHEJ1(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2P Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
LRSAM1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease axonal type 2P Hypertrophic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
LRSAM1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease axonal type 2P Roussy-levy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRSAM1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 2A1 Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
KIF1B(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 2D Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
GARS1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 2T Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
MME(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 2T Hypertrophic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
MME(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4 Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
PRX(4)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4 Hypertrophic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PRX(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4B3 Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
SBF1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 4B3 Hypertrophic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
SBF1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 4B3 Roussy-levy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SBF1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 4C Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
SH3TC2(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Chromosome 10q deletion syndrome Vesicoureteral reflux
1 gene
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1 of 1 corroborated by 2+ sources
EBF3(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 323 →
Chromosome 1q deletion syndrome Developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB18(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Chromosome 1q43-q44 deletion syndrome Developmental delay
1 gene
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ZBTB18(1)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Chromosome 20q11-q12 deletion syndrome Cutaneous squamous cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
EPB41L1(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 29 →
CNGA3-related retinopathy Cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CNGA3(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
CNGB3-related retinopathy Cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CNGB3(4)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Dermatitis immunodeficiency 15a
1 gene
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1 of 1 corroborated by 2+ sources
IKBKB(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.