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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Color vision deficiency lethal osteosclerotic bone dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FAM20C(2)
0.001 1.000 6.27e-2 6.42e-2 —
alkylglycerone-phosphate synthase deficiency Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
AGPS(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Ventriculomegaly with arthrogryposis
1 gene
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1 of 1 corroborated by 2+ sources
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Webb-dattani syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARNT2(5)
0.001 1.000 6.27e-2 6.42e-2 —
band heterotopia of brain Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
EML1(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Inflammatory demyelinating polyneuropathy
1 gene
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CNBD1(1)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency immunodeficiency 76
1 gene
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1 of 1 corroborated by 2+ sources
FCHO1(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency red color blindness
1 gene
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1 of 1 corroborated by 2+ sources
OPN1LW(4)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency primary ciliary dyskinesia 16
1 gene
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1 of 1 corroborated by 2+ sources
DNAL1(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency phosphoenolpyruvate carboxykinase deficiency, cytosolic
1 gene
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1 of 1 corroborated by 2+ sources
PCK1(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency PLIN1-related familial partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLIN1(2)
0.001 1.000 6.27e-2 6.42e-2 —
Biliary-renal-neuro-skeletal syndrome Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IFT56(4)
0.001 1.000 6.27e-2 6.42e-2 —
Clark-baraitser syndrome Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRIP12(5)
0.001 1.000 6.27e-2 6.42e-2 —
ciliary dyskinesia, primary, 53 Color vision deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CLXN(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency scott syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO6(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency spastic paraplegia, intellectual disability, nystagmus, and obesity
1 gene
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1 of 1 corroborated by 2+ sources
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Saccharopinuria
1 gene
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1 of 1 corroborated by 2+ sources
AASS(3)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Retinitis pigmentosa, hearing loss, premature aging, short stature, facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXOSC2(5)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency hyperlysinemia
1 gene
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1 of 1 corroborated by 2+ sources
AASS(2)
0.001 1.000 6.27e-2 6.42e-2 —
Color vision deficiency Hip dislocation-facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM33(3)
0.001 1.000 6.27e-2 6.42e-2 —
hyper-IgE recurrent infection syndrome 3, autosomal recessive Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
ZNF341(2)
0.001 1.000 6.24e-2 6.39e-2 —
Prostate cancer Thrombocytopenia with platelet secretion defect
1 gene
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1 of 1 corroborated by 2+ sources
SLFN14(3)
0.001 1.000 6.24e-2 6.39e-2 —
Prostate cancer thrombotic disease
1 gene
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1 of 1 corroborated by 2+ sources
MAST2(2)
0.001 1.000 6.24e-2 6.39e-2 —
Prostate cancer tooth agenesis, selective, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX9(3)
0.001 1.000 6.24e-2 6.39e-2 —
congenital disorder of glycosylation type 1E Prostate cancer
1 gene
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1 of 1 corroborated by 2+ sources
DPM1(2)
0.001 1.000 6.24e-2 6.39e-2 —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.