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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Autoinflammatory syndrome, familial, behcet-like Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TNFAIP3(5)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 25 →
autosomal recessive osteopetrosis 3 Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CA2(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Axial spondylometaphyseal dysplasia Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
CFAP410(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Barber-say syndrome Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(7)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
BBS1-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS1(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
BBS12-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS12(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
BBS2-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS2(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
BBS4-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS4(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
BBS7-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS7(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
Ciliopathy Heart defect, tongue hamartoma and polysyndactyly
1 gene
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1 of 1 corroborated by 2+ sources
WDPCP(6)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
Corneal astigmatism hermansky-pudlak syndrome 7
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Ablepharon macrostomia syndrome Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Abri amyloidosis Cerebral amyloid angiopathy
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Acys amyloidosis Cerebral amyloid angiopathy
1 gene
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1 of 1 corroborated by 2+ sources
CST3(4)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Acys amyloidosis Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
CST3(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
ALS2-related motor neuron disease Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
ALS2(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
amyotrophic lateral sclerosis type 12 Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
PHIP-related behavioral problems-intellectual disability-obesity-dysmorphic features syndrome Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PHIP(4)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Corneal astigmatism renal dysplasia, cystic, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
BICC1(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Ciliopathy Retinitis pigmentosa with or without situs inversus
1 gene
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1 of 1 corroborated by 2+ sources
ARL2BP(5)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
Motor neuron disease severe combined immunodeficiency due to LAT deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LAT(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Ciliopathy short-rib thoracic dysplasia 19 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT81(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Motor neuron disease T-B+ severe combined immunodeficiency due to JAK3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
JAK3(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Corneal astigmatism temtamy preaxial brachydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHSY1(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Cerebral amyloid angiopathy Uridine-cytidineuria
1 gene
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1 of 1 corroborated by 2+ sources
SLC28A1(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.