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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cone-rod dystrophy red color blindness
1 gene
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1 of 1 corroborated by 2+ sources
OPN1LW(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Hyperekplexia epilepsy syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
colorectal cancer, hereditary nonpolyposis, type 7 Esophageal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
MLH3(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
cone dystrophy 3 Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GUCA1A(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy cone-rod dystrophy 20
1 gene
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1 of 1 corroborated by 2+ sources
POC1B(7)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy MERTK-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
MERTK(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy IMPG2-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG2(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
intellectual disability, X-linked 107 X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
STEEP1(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Early-onset parkinsonism-intellectual disability syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Early-onset progressive neurodegeneration-blindness-ataxia-spasticity syndrome Esophageal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
UCHL1(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy enhanced s-cone syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NR2E3(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy optic atrophy 13 with retinal and foveal abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
SSBP1(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
CACNA2D4-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Female restricted epilepsy with intellectual disability X-linked intellectual disability
1 gene
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PCDH19(1)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy Goldmann-favre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NR2E3(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Aarskog-scott syndrome, x-linked X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
FGD1(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Acyl-coa binding domain containing protein 5 deficiency Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →
ADAM9-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ADAM9(6)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Creatine transporter deficiency X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A8(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
CERKL-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CERKL(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →
CNGA1-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CNGA1(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →
CNGA3-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CNGA3(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
renpenning syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
PQBP1(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy retinitis pigmentosa 65
1 gene
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1 of 1 corroborated by 2+ sources
CDHR1(8)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →
Cone-rod dystrophy RP2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP2(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.