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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
fanconi anemia complementation group b Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
FANCB(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Chung-jansen syndrome Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
PHIP(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
ATP6AP2-related disorder Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP2(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Brachyphalangy polydactyly tibial aplasia hypoplasia syndrome Hyperalgesia
1 gene
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1 of 1 corroborated by 2+ sources
HMGB1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture spondyloepimetaphyseal dysplasia-short limb-abnormal calcification syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DDR2(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked syndromic X-linked intellectual disability Nascimento type
1 gene
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1 of 1 corroborated by 2+ sources
UBE2A(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. Cluster 115 →
Intellectual developmental disorder, x-linked syndromic X-linked intellectual disability Raymond type
1 gene
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1 of 1 corroborated by 2+ sources
ZDHHC9(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. Cluster 115 →
Intellectual developmental disorder, x-linked syndromic X-linked intellectual disability Siderius type
1 gene
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1 of 1 corroborated by 2+ sources
PHF8(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. Cluster 115 →
Intellectual developmental disorder, x-linked syndromic X-linked intellectual disability Snyder type
1 gene
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1 of 1 corroborated by 2+ sources
SMS(3)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture temtamy preaxial brachydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHSY1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. Cluster 299 →
Common atrium Dupuytren contracture
1 gene
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1 of 1 corroborated by 2+ sources
CDK8(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
congenital disorder of glycosylation type II Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture macular corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CHST6(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Hemorrhoid MERTK-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
MERTK(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Conjunctival disease Salivary gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DAPK1(2)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Macular dystrophy Thyroid hormone resistance
1 gene
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1 of 1 corroborated by 2+ sources
THRB(5)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Diaphragm disease Salivary gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
WNT5B(2)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Congenital cataract hearing loss developmental delay syndrome Partial epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SLC33A1(3)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Congenital chloride diarrhea Iron metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
MON1A(2)
0.038 0.250 5.70e-3 6.92e-3 ✓ sig. —
Sialolithiasis Treacher collins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLR1D(8)
0.038 0.250 5.70e-3 6.92e-3 ✓ sig. —
Obstructive azoospermia Sinusitis
1 gene
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1 of 1 corroborated by 2+ sources
CFTR(2)
0.038 0.250 5.70e-3 6.92e-3 ✓ sig. —
Brain aneurysm Tongue disorder
1 gene
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ESRRG(1)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Brain aneurysm Uterine benign neoplasm
1 gene
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BET1L(1)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Brain aneurysm holocarboxylase synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HLCS(2)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Brain aneurysm primary ciliary dyskinesia 12
1 gene
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1 of 1 corroborated by 2+ sources
RSPH9(2)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.