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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
hsd10 mitochondrial disease Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Hemorrhoid ichthyosiform erythroderma, corneal involvement, and hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
AP1B1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Hemorrhoid myopathy, centronuclear, 6, with fiber-type disproportion
1 gene
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1 of 1 corroborated by 2+ sources
MAP3K20(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture neuropathy, hereditary sensory, type 1D
1 gene
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1 of 1 corroborated by 2+ sources
ATL1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Developmental delay with intellectual disability and obesity Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
PHIP(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Early-onset parkinsonism-intellectual disability syndrome Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(7)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked Vacterl-hydrocephalus syndrome
1 gene
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FANCB(1)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked Waisman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture Warburg-cinotti syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DDR2(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture Winchester syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MMP14(6)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked dystonia-parkinsonism
1 gene
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1 of 1 corroborated by 2+ sources
TAF1(7)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked epilepsy with learning disability and behavior disorder syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked epilepsy with variable learning disabilities and behavior disorders
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked epilepsy-learning disabilities-behavior disorders syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked female restricted facial dysmorphism, short stature, choanal atresia, intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
USP9X(6)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked immunodeficiency with magnesium defect, epstein-barr virus infection and neoplasia
1 gene
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1 of 1 corroborated by 2+ sources
MAGT1(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. Cluster 115 →
Intellectual developmental disorder, x-linked X-linked intellectual disability, Cabezas type
1 gene
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1 of 1 corroborated by 2+ sources
CUL4B(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked myopathy with excessive autophagy
1 gene
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1 of 1 corroborated by 2+ sources
RPL10(6)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked parkinsonism-spasticity syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP2(6)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture Intellectual developmental disorder hypotonia behavioral
1 gene
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1 of 1 corroborated by 2+ sources
CDK8(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked intellectual disability, X-linked 106
1 gene
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1 of 1 corroborated by 2+ sources
OGT(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. Cluster 115 →
Intellectual developmental disorder, x-linked intellectual disability, X-linked 107
1 gene
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1 of 1 corroborated by 2+ sources
STEEP1(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Hemorrhoid Intestinal dysmotility syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO1(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Aarskog-scott syndrome, x-linked Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
FGD1(3)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Erythrocyte amp deaminase deficiency Hemorrhoid
1 gene
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1 of 1 corroborated by 2+ sources
AMPD3(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.