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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Brachydactyly-elbow wrist dysplasia syndrome Testicular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PITX1(3)
0.016 0.500 7.78e-3 9.07e-3 ✓ sig. —
Aortic stenosis Carey-fineman-ziter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYMK(6)
0.016 0.500 7.78e-3 9.07e-3 ✓ sig. —
Frontotemporal dementia Masp2 deficiency
1 gene
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TARDBP(1)
0.016 0.500 7.78e-3 9.07e-3 ✓ sig. —
Peripheral neuropathy, autosomal recessive, with or without impaired intellectual development Testicular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MCM3AP(6)
0.016 0.500 7.78e-3 9.07e-3 ✓ sig. —
Peripheral neuropathy, autosomal recessive, with or without impaired intellectual development Testicular germ cell tumor
1 gene
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1 of 1 corroborated by 2+ sources
MCM3AP(6)
0.016 0.500 7.78e-3 9.07e-3 ✓ sig. —
Peroxisomal fatty acyl-coa reductase 1 disorder Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
FAR1(4)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Regressive neurodevelopmental disorder dystonia seizures Spastic paraplegia
1 gene
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IRF2BPL(1)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
neurodegenerative disease Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BPL(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Colorectal adenomatous polyposis Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
MUTYH(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Congenital hypoplasia of penis Spastic paraplegia
1 gene
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PHF6(1)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Ataxia, sensory, autosomal dominant Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
RNF170(6)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Cataract-neurodevelopmental syndrome Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
FAR1(5)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Chromosome 15q deletion syndrome Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
MCTP2(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Cirrhosis-dystonia-polycythemia-hypermanganesemia syndrome Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
3-hydroxyisobutyric aciduria Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
HIBADH(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. Cluster 178 →
Alanine-glyoxylate aminotransferase deficiency Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
AGXT(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Allan-herndon-dudley syndrome Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A2(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. Cluster 244 →
ALS2-related motor neuron disease Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
ALS2(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Amr syndrome Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
AHSG(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Erythrocyte amp deaminase deficiency Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
AMPD3(5)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
fatty acyl-CoA reductase 1 deficiency Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
FAR1(4)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
fatty acyl-CoA reductase 1 upregulation Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
FAR1(4)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
fructose-1,6-bisphosphatase deficiency Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
FBP1(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
glutamate pyruvate transaminase 2 deficiency Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
GPT2(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
mucopolysaccharidosis type 1 Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
IDUA(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.