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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
microcephalic osteodysplastic primordial dwarfism type II Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
PCNT(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
netherton syndrome Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
SPINK5(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
HELIOS deficiency Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
IKZF2(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
hermansky-pudlak syndrome 6 Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
HPS6(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Congenital small-platelet thrombocytopenia Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(3)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Biliary cirrhosis Cranioosteoarthropathy
1 gene
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1 of 1 corroborated by 2+ sources
HPGD(4)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Ataxia-pancytopenia syndrome Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
SAMD9L(5)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
autosomal systemic lupus erythematosus type 16 Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. Cluster 25 →
Beukes hip dysplasia Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
UFSP2(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Proximal renal tubular acidosis Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A4(3)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Biliary cirrhosis Digital clubbing, isolated congenital
1 gene
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1 of 1 corroborated by 2+ sources
HPGD(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
dilated cardiomyopathy 1V Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
PSEN2(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
thrombocytopenia 3 Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Abri amyloidosis Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
amyotrophic lateral sclerosis type 15 Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
UBQLN2(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
anterior segment dysgenesis 7 Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
PXDN(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Biliary cirrhosis Childhood-onset sensorineural hearing impairment
1 gene
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1 of 1 corroborated by 2+ sources
PRORP(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Choreoacanthocytosis Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(3)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Biliary cirrhosis immunodeficiency 19
1 gene
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1 of 1 corroborated by 2+ sources
CD3D(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
immunodeficiency, common variable, 7 Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CR2(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Biliary cirrhosis Inner ear disease
1 gene
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CENPB(1)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Hyperuricemia Infantile liver failure
1 gene
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1 of 1 corroborated by 2+ sources
SCYL1(2)
0.015 0.500 8.30e-3 9.62e-3 ✓ sig. —
Azoospermia Cryptospermia
1 gene
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DMC1(1)
0.028 0.250 8.29e-3 9.61e-3 ✓ sig. —
Chromosomal instability Lymphedema
1 gene
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1 of 1 corroborated by 2+ sources
KIF11(2)
0.042 0.125 8.28e-3 9.61e-3 ✓ sig. —
Charcot-Marie-Tooth disease, demyelinating, type 1J Vitiligo
1 gene
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1 of 1 corroborated by 2+ sources
ITPR3(2)
0.008 1.000 8.18e-3 9.49e-3 ✓ sig. Cluster 39 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.