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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Lung cancer Retinal dystrophy and obesity
1 gene
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1 of 1 corroborated by 2+ sources
TUB(2)
0.001 1.000 8.58e-2 8.67e-2 —
Coronary artery disease Retinal dystrophy and obesity
1 gene
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1 of 1 corroborated by 2+ sources
TUB(2)
0.001 1.000 7.37e-2 7.48e-2 —
Hearing loss Retinal dystrophy and obesity
1 gene
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1 of 1 corroborated by 2+ sources
TUB(2)
0.003 1.000 2.56e-2 2.72e-2 ✓ sig. —
Retinal dystrophy, juvenile cataracts, and short stature syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RDH11(2)
0.003 1.000 2.36e-2 2.52e-2 ✓ sig. —
Retinal dystrophy with leukodystrophy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(2)
0.003 1.000 2.36e-2 2.52e-2 ✓ sig. —
Retinal dystrophy and obesity Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
TUB(5)
0.003 1.000 2.36e-2 2.52e-2 ✓ sig. —
Retinal dystrophy with or without extraocular anomalies Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RCBTB1(3)
0.003 1.000 2.36e-2 2.52e-2 ✓ sig. —
Ankylosing spondylitis Gonadal dysgenesis, dysmorphic facies, retinal dystrophy, and myopathy
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R3C(2)
0.003 1.000 2.02e-2 2.17e-2 ✓ sig. —
Gonadal dysgenesis, dysmorphic facies, retinal dystrophy, and myopathy Sclerosing cholangitis
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R3C(2)
0.004 1.000 1.49e-2 1.63e-2 ✓ sig. —
Optic atrophy Retinal dystrophy, juvenile cataracts, and short stature syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RDH11(2)
0.005 1.000 1.22e-2 1.35e-2 ✓ sig. —
Retinal dystrophy with leukodystrophy Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(2)
0.007 1.000 9.17e-3 1.03e-2 ✓ sig. —
Retinal dystrophy with inner retinal dysfunction and ganglion cell abnormalities Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(2)
0.008 1.000 8.26e-3 9.40e-3 ✓ sig. —
Gonadal dysgenesis, dysmorphic facies, retinal dystrophy, and myopathy Spermatogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
PPP2R3C(4)
0.009 1.000 7.30e-3 8.44e-3 ✓ sig. —
Essential tremor Retinal dystrophy and obesity
1 gene
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1 of 1 corroborated by 2+ sources
TUB(3)
0.010 1.000 6.46e-3 7.56e-3 ✓ sig. Cluster 271 →
Eye disease Retinal dystrophy, optic nerve edema, splenomegaly, anhidrosis, and migraine headache syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALPK1(3)
0.010 1.000 6.13e-3 7.21e-3 ✓ sig. —
Retinal dystrophy with or without extraocular anomalies Retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RCBTB1(2)
0.011 1.000 5.75e-3 6.78e-3 ✓ sig. —
Brain injuries Cerebellar dysplasia with cysts with or without retinal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LAMA1(2)
0.012 1.000 5.17e-3 6.16e-3 ✓ sig. —
Cone-rod dystrophy Retinal dystrophy with or without macular staphyloma
1 gene
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1 of 1 corroborated by 2+ sources
CFAP410(4)
0.013 1.000 4.91e-3 5.89e-3 ✓ sig. —
Cone-rod dystrophy Retinal dystrophy with leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(2)
0.013 1.000 4.91e-3 5.89e-3 ✓ sig. —
Bothnia retinal dystrophy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
RLBP1(7)
0.013 1.000 4.91e-3 5.89e-3 ✓ sig. —
Leber congenital amaurosis Retinal dystrophy with or without macular staphyloma
1 gene
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1 of 1 corroborated by 2+ sources
CFAP410(2)
0.014 1.000 4.71e-3 5.69e-3 ✓ sig. —
Cerebral amyloid angiopathy Retinal dystrophy with inner retinal dysfunction and ganglion cell abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(3)
0.014 1.000 4.58e-3 5.54e-3 ✓ sig. —
Bothnia retinal dystrophy Macular degeneration
1 gene
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1 of 1 corroborated by 2+ sources
RLBP1(7)
0.014 1.000 4.39e-3 5.34e-3 ✓ sig. —
Cone dystrophy Retinal dystrophy with or without macular staphyloma
1 gene
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1 of 1 corroborated by 2+ sources
CFAP410(2)
0.025 1.000 2.52e-3 3.27e-3 ✓ sig. —
Inherited retinal dystrophy Microphthalmia with retinitis pigmentosa and ocular anomalies
1 gene
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1 of 1 corroborated by 2+ sources
C1QTNF5(2)
0.050 0.500 2.32e-3 3.05e-3 ✓ sig. —

Showing 25 of 143 matching pairs, sorted by significance (descending). Click a column header to sort.