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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Mountain sickness Obstructive pulmonary disease
1 gene
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AEBP2(1)
0.002 0.500 7.09e-2 7.21e-2 —
Obstructive pulmonary disease Young syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFAP221(3)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Obstructive pulmonary disease Van den ende-gupta syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SCARF2(2)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Obstructive pulmonary disease Suleiman-el-hattab syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TASP1(2)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Obstructive pulmonary disease Seckel syndrome 10
1 gene
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1 of 1 corroborated by 2+ sources
NSMCE2(3)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Obstructive pulmonary disease Poikiloderma with neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
USB1(2)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Neurodevelopmental disorder with spasticity, seizures, and brain abnormalities Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
NSRP1(3)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Neurodegeneration, early-onset, with choreoathetoid movements and microcytic anemia Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
IREB2(2)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Neurocardiofaciodigital syndrome Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Myopathy, centronuclear, 5 Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
SPEG(3)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Macrocephaly, dysmorphic facies, and psychomotor retardation Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
HERC1(2)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. Cluster 49 →
Hexosaminidase activator deficiency Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
GM2A(2)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Erythrocyte amp deaminase deficiency Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
AMPD3(5)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Dmgdh deficiency Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
DMGDH(2)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Dimethylglycine dehydrogenase deficiency Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
DMGDH(7)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
B-cell immunodeficiency, distal limb anomalies, and urogenital malformations Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
TOP2B(3)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Developmental delay, epilepsy, and microcephaly Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
NSRP1(2)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Ciliary dyskinesia, primary, 42 Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
MCIDAS(3)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Colobomatous macrophthalmia microcornea syndrome Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
CRIM1(3)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Congenital disorder of glycosylation with defective fucosylation 1 Obstructive pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
FUT8(3)
0.002 1.000 3.61e-2 3.78e-2 ✓ sig. —
Epilepsy Pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.004 1.000 1.76e-2 1.90e-2 ✓ sig. —
Interstitial lung disease Pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.014 1.000 4.39e-3 5.34e-3 ✓ sig. —
Generalized epilepsy Pulmonary disease
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.015 1.000 4.20e-3 5.13e-3 ✓ sig. —
Chronic obstructive pulmonary disease Neurodevelopmental disorder with progressive spasticity and brain abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
EEFSEC(2)
0.024 1.000 2.65e-3 3.41e-3 ✓ sig. —
Chronic obstructive pulmonary disease Susceptibility to respiratory infections associated with CD8alpha chain mutation
1 gene
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1 of 1 corroborated by 2+ sources
CD8A(2)
0.024 1.000 2.65e-3 3.41e-3 ✓ sig. Cluster 174 →

Showing 25 of 43 matching pairs, sorted by significance (descending). Click a column header to sort.