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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
12q15q21 microdeletion syndrome Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
CNOT2(3)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
ALG12-congenital disorder of glycosylation Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
ALG12(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Osteoarthritis Pemphigus foliaceus
1 gene
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1 of 1 corroborated by 2+ sources
RAN(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Osteoarthritis Perlman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DIS3L2(5)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
Osteoarthritis Polydactyly-macrocephaly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MAX(5)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
autosomal recessive spinocerebellar ataxia 14 Osteoarthritis
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN2(2)
0.001 1.000 4.74e-2 4.92e-2 ✓ sig. —
autosomal recessive cerebellar ataxia Psoriasis
1 gene
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1 of 1 corroborated by 2+ sources
CWF19L1(2)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —
autosomal recessive osteopetrosis 5 Psoriasis
1 gene
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1 of 1 corroborated by 2+ sources
OSTM1(2)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —
BBS7-related ciliopathy Psoriasis
1 gene
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1 of 1 corroborated by 2+ sources
BBS7(2)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —
Benign flecked retina Psoriasis
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G5(3)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. Cluster 28 →
intellectual disability, autosomal recessive 61 Psoriasis
1 gene
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1 of 1 corroborated by 2+ sources
RUSC2(2)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —
Psoriasis Thiopurine s-methyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPMT(4)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —
Psoriasis Von zumbuzschs disease
1 gene
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1 of 1 corroborated by 2+ sources
IL36RN(5)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —
Psoriasis Worster drought syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TMTC4(2)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —
Ditra syndrome Psoriasis
1 gene
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1 of 1 corroborated by 2+ sources
IL36RN(6)
0.001 1.000 4.75e-2 4.92e-2 ✓ sig. —
Global developmental delay Turnpenny-fry syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCGF2(5)
0.003 0.500 4.75e-2 4.92e-2 ✓ sig. —
Global developmental delay Periventricular leukomalacia
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KC1(2)
0.003 0.500 4.75e-2 4.92e-2 ✓ sig. —
Global developmental delay Gm2 gangliosidosis
1 gene
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HEXA(1)
0.003 0.500 4.75e-2 4.92e-2 ✓ sig. —
Diverticular disease Interferon gamma receptor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IFNGR2(2)
0.004 0.333 4.77e-2 4.95e-2 ✓ sig. —
Diverticular disease multiple acyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ETFA(3)
0.004 0.333 4.77e-2 4.95e-2 ✓ sig. —
Hypothyroidism Peroxisomal acyl-coa oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TEN1(2)
0.003 0.500 4.80e-2 4.98e-2 ✓ sig. —
Congenital stromal corneal dystrophy Endometriosis
1 gene
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1 of 1 corroborated by 2+ sources
SPARCL1(3)
0.003 0.500 4.82e-2 5.00e-2 —
Hypertrophic cardiomyopathy multiple acyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ETFDH(2)
0.004 0.333 4.91e-2 5.09e-2 —
Glioma lethal osteosclerotic bone dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FAM20C(2)
0.001 1.000 4.92e-2 5.10e-2 —
Glioma leukodystrophy, hypomyelinating, 14
1 gene
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1 of 1 corroborated by 2+ sources
UFM1(2)
0.001 1.000 4.92e-2 5.10e-2 —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.