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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Central nervous system cancer leukodystrophy, hypomyelinating, 14
1 gene
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1 of 1 corroborated by 2+ sources
UFM1(2)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. —
Central nervous system cancer Microscopic polyangiitis
1 gene
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CDH19(1)
0.002 1.000 4.26e-2 4.44e-2 ✓ sig. —
Amyotrophic lateral sclerosis Oculopharyngeal muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.003 0.500 4.27e-2 4.44e-2 ✓ sig. —
neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
VARS1(2)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Central centrifugal cicatricial alopecia Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
PADI3(2)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis Thrombocytopenia with anemia and myelofibrosis
1 gene
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1 of 1 corroborated by 2+ sources
MPIG6B(6)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis X-linked ichthyosis with steryl-sulfatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STS(3)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis You-hoover-fong syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TELO2(3)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
immunodeficiency 18 Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
CD3E(3)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Intellectual developmental disorder seizures movement Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
PDE2A(4)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis systemic lupus erythematosus 18
1 gene
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1 of 1 corroborated by 2+ sources
PLD4(4)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
Rheumatoid arthritis TELO2-related intellectual disability-neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
TELO2(2)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
colobomatous microphthalmia-rhizomelic dysplasia syndrome Rheumatoid arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MAB21L2(3)
0.002 1.000 4.30e-2 4.48e-2 ✓ sig. —
MHC class II deficiency Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
CIITA(2)
0.006 0.250 4.34e-2 4.52e-2 ✓ sig. —
Tropical calcific pancreatitis Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
SPINK1(6)
0.003 0.500 4.39e-2 4.57e-2 ✓ sig. —
Cortisone reductase deficiency Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
H6PD(6)
0.003 0.500 4.39e-2 4.57e-2 ✓ sig. —
propionic acidemia Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
PCCB(2)
0.003 0.500 4.39e-2 4.57e-2 ✓ sig. —
Interferon gamma receptor deficiency Sclerosing cholangitis
1 gene
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1 of 1 corroborated by 2+ sources
IFNGR2(2)
0.004 0.333 4.41e-2 4.60e-2 ✓ sig. —
Crohn disease immunodeficiency 121 with autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
PSMB10(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
immunodeficiency 121 with autoinflammation Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
PSMB10(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease immunodeficiency, common variable, 14
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BP2(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
immunodeficiency, common variable, 14 Inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BP2(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Crohn disease inflammatory bowel disease 28
1 gene
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1 of 1 corroborated by 2+ sources
IL10RA(3)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Inflammatory bowel disease inflammatory bowel disease 28
1 gene
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1 of 1 corroborated by 2+ sources
IL10RA(5)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —
Inflammatory bowel disease inflammatory skin and bowel disease, neonatal, 1
1 gene
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1 of 1 corroborated by 2+ sources
ADAM17(2)
0.001 1.000 4.48e-2 4.66e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.