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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
congenital disorder of glycosylation, type IIq Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
COG2(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
ALG11-congenital disorder of glycosylation Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
ALG11(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Alys amyloidosis Ulcerative colitis
1 gene
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LYZ(1)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
phosphohydroxylysinuria Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
PHYKPL(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Chromosome 16p11.2 microdeletion syndrome Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
SH2B1(3)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
immunodeficiency, common variable, 14 Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BP2(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Kindler epidermolysis bullosa Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
kindler syndrome Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
FERMT1(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
hand-foot-genital syndrome Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
HOXA13(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Cystathioninuria Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
CTH(6)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
ehlers-danlos syndrome, musculocontractural type 2 Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
DSE(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Ulcerative colitis Uterine bilocularis
1 gene
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1 of 1 corroborated by 2+ sources
HOXA13(2)
0.002 1.000 3.97e-2 4.15e-2 ✓ sig. —
Microcephaly Tessadori-van haaften neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
H4C3(5)
0.009 0.167 4.06e-2 4.25e-2 ✓ sig. —
Nonalcoholic fatty liver disease Primary microcephaly-mild intellectual disability-young-onset diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRMT10A(3)
0.003 0.500 4.06e-2 4.25e-2 ✓ sig. —
Atelis syndrome Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
SLF2(4)
0.003 0.500 4.06e-2 4.25e-2 ✓ sig. —
Intestinal vascular insufficiency Nonalcoholic fatty liver disease
1 gene
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NEDD9(1)
0.003 0.500 4.06e-2 4.25e-2 ✓ sig. —
Hyperprolinemia Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
ALDH4A1(7)
0.003 0.500 4.06e-2 4.25e-2 ✓ sig. —
hearing loss, autosomal recessive 116 Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CLDN9(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Prostatic neoplasms radio-tartaglia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPEN(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
neurodevelopmental disorder with severe motor impairment and absent language Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DHX30(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Prostatic neoplasms spondyloepiphyseal dysplasia, kondo-fu type
1 gene
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1 of 1 corroborated by 2+ sources
MBTPS1(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Prostatic neoplasms systemic lupus erythematosus, susceptibility to, 1
1 gene
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1 of 1 corroborated by 2+ sources
TLR5(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
17-beta-hydroxysteroid dehydrogenase deficiency Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B3(4)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
Absence of fingerprints-congenital milia syndrome Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —
ADAM9-related retinopathy Prostatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ADAM9(2)
0.002 1.000 4.07e-2 4.26e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.