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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Kidney disease nephrotic syndrome, type 8
1 gene
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1 of 1 corroborated by 2+ sources
ARHGDIA(2)
0.002 1.000 2.76e-2 2.94e-2 ✓ sig. —
Kidney disease Neurooculocardio-genitourinary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR37(6)
0.002 1.000 2.76e-2 2.94e-2 ✓ sig. —
Aica-ribosiduria Kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
ATIC(2)
0.002 1.000 2.76e-2 2.94e-2 ✓ sig. —
Deeah syndrome Kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
MADD(4)
0.002 1.000 2.76e-2 2.94e-2 ✓ sig. —
Kidney disease Transaldolase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TALDO1(6)
0.002 1.000 2.76e-2 2.94e-2 ✓ sig. —
Arthrogryposis with neurodevelopmental impairment and seizures Kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC35A3(4)
0.002 1.000 2.76e-2 2.94e-2 ✓ sig. —
atypical hemolytic-uremic syndrome with DGKE deficiency Kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
DGKE(2)
0.002 1.000 2.76e-2 2.94e-2 ✓ sig. —
Beck-fahrner syndrome Kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
TET3(6)
0.002 1.000 2.76e-2 2.94e-2 ✓ sig. —
Cardiovascular disease Midline facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
PCSK7(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease primary ciliary dyskinesia 23
1 gene
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1 of 1 corroborated by 2+ sources
ODAD2(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease Salt and pepper developmental regression syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease inherited blood coagulation disorder
1 gene
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1 of 1 corroborated by 2+ sources
APOLD1(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease johanson-blizzard syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBR1(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease glycogen storage disease due to muscle and heart glycogen synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GYS1(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease GM3 synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease Osteomalacia
1 gene
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1 of 1 corroborated by 2+ sources
MEPE(3)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease hyperphosphatasia with intellectual disability syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
PGAP3(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Cardiovascular disease Corneal degeneration
1 gene
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RDH8(1)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
3-hydroxyisobutyric aciduria Cardiovascular disease
1 gene
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1 of 1 corroborated by 2+ sources
HIBADH(3)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
ALG9-associated autosomal dominant polycystic kidney disease Cardiovascular disease
1 gene
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1 of 1 corroborated by 2+ sources
ALG9(2)
0.002 1.000 2.81e-2 2.99e-2 ✓ sig. —
Gastric cancer Sarcoglycanopathies
1 gene
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1 of 1 corroborated by 2+ sources
SGCG(2)
0.005 0.500 2.81e-2 2.99e-2 ✓ sig. —
Gm2 gangliosidosis Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
GM2A(3)
0.005 0.500 2.82e-2 3.00e-2 ✓ sig. —
Erythrocyte amp deaminase deficiency Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
AMPD3(5)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
free sialic acid storage disease Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
SLC17A5(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Al kaissi syndrome Melanoma
1 gene
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CDK10(1)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.