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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Retinitis pigmentosa SNRNP200-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa spondylometaphyseal dysplasia-cone-rod dystrophy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCYT1A(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa SRD5A3-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
SRD5A3(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
PCARE-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PCARE(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
PDE6A-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PDE6A(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
PDE6G-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PDE6G(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
PHARC syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ABHD12(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
phytanoyl-CoA hydroxylase deficiency Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PHYH(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
PRPF31-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PRPF31(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
RAB28-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RAB28(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
RCBTB1-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RCBTB1(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
RD3-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RD3(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Familial danish dementia Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
GNAT2-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
GNAT2(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
GNPTG-mucolipidosis Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
GNPTG(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
GPR179-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
GPR179(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
CEP164-related ciliopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
CEP164(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Cerebellar dysfunction, impaired intellectual development, and hypogonadotropic hypogonadism Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PRDM13(5)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
CNGB1-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
CNGB1(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Costeff optic atrophy syndrome Retinitis pigmentosa
1 gene
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OPA3(1)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Deafness dystonia syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
TIMM8A(4)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Deafness, encephaloneuropathy, obesity, valvulopathy syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PDSS1(4)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa Tritanopia
1 gene
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1 of 1 corroborated by 2+ sources
OPN1SW(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa TUBB4B-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4B(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa Usher syndrome type 3
1 gene
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1 of 1 corroborated by 2+ sources
CLRN1(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.