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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Aplasia cutis-enamel dysplasia syndrome Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(5)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms Urinary tract obstruction
1 gene
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1 of 1 corroborated by 2+ sources
RIOX2(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms xeroderma pigmentosum group C
1 gene
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1 of 1 corroborated by 2+ sources
XPC(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms mucopolysaccharidosis type 2
1 gene
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1 of 1 corroborated by 2+ sources
IDS(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms Prader-willi-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CPE(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms Pulmonary agenesis
1 gene
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1 of 1 corroborated by 2+ sources
EFNB2(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. Cluster 5 →
extraoral halitosis due to methanethiol oxidase deficiency Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. Cluster 5 →
Lung neoplasms Rufous oculocutaneous albinism
1 gene
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TYRP1(1)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Lung neoplasms SMARCC1-associated developmental dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMARCC1(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Congenital scalp aplasia cutis-enamel hypoplasia-developmental delay-intellectual disability syndrome Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(2)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Corpus callosum agenesis with intellectual disability, coloboma, micrognathia Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IGBP1(5)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Corpus callosum agenesis with intellectual disability, ocular coloboma, micrognathia Lung neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IGBP1(3)
0.004 1.000 1.65e-2 1.81e-2 ✓ sig. —
Congenital cataract microcornea with corneal opacity Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
PXDN(3)
0.008 0.500 1.66e-2 1.82e-2 ✓ sig. —
Neuroocular syndrome Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
PRR12(5)
0.008 0.500 1.66e-2 1.82e-2 ✓ sig. Cluster 25 →
Fructokinase deficiency Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
CGREF1(2)
0.008 0.500 1.66e-2 1.82e-2 ✓ sig. —
Hypertrophic cardiomyopathy Tritanopia
1 gene
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1 of 1 corroborated by 2+ sources
OPN1SW(4)
0.004 1.000 1.66e-2 1.83e-2 ✓ sig. —
dilated cardiomyopathy 1M Hypertrophic cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
CSRP3(4)
0.004 1.000 1.66e-2 1.83e-2 ✓ sig. Cluster 369 →
dilated cardiomyopathy 1Z Hypertrophic cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
TNNC1(3)
0.004 1.000 1.66e-2 1.83e-2 ✓ sig. —
distal myopathy with vocal cord weakness Hypertrophic cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
MATR3(2)
0.004 1.000 1.66e-2 1.83e-2 ✓ sig. —
Danon disease Hypertrophic cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
LAMP2(5)
0.004 1.000 1.66e-2 1.83e-2 ✓ sig. —
Hypertrophic cardiomyopathy Rhizomelic dysplasia, ain-naz type
1 gene
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1 of 1 corroborated by 2+ sources
GNPNAT1(4)
0.004 1.000 1.66e-2 1.83e-2 ✓ sig. —
Hypertrophic cardiomyopathy Intellectual developmental disorder behavioral dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
PHF21A(4)
0.004 1.000 1.66e-2 1.83e-2 ✓ sig. —
Hypertrophic cardiomyopathy Parkinsonism with polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
UQCRC1(3)
0.004 1.000 1.66e-2 1.83e-2 ✓ sig. —
Major salivary gland carcinoma Nasopharyngeal neoplasms
1 gene
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PPFIA2(1)
0.020 0.167 1.66e-2 1.83e-2 ✓ sig. —
Esophageal squamous cell carcinoma White spongue nevus
1 gene
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1 of 1 corroborated by 2+ sources
KRT13(6)
0.008 0.500 1.67e-2 1.83e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.