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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
1q44 microdeletion syndrome Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
HNRNPU(3)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy X-linked epilepsy with learning disability and behavior disorder syndrome
1 gene
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SYN1(1)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy X-linked epilepsy with variable learning disabilities and behavior disorders
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(4)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy X-linked epilepsy-learning disabilities-behavior disorders syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Partial corpus callosum agenesis
1 gene
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1 of 1 corroborated by 2+ sources
KPNA7(3)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Ataxia with oculomotor apraxia and hypoalbuminemia Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
APTX(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
developmental and epileptic encephalopathy, 77 Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PIGQ(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Early-onset seizures-distal limb anomalies-facial dysmorphism-global developmental delay syndrome Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
OTUD6B(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Neurogenic bladder
1 gene
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1 of 1 corroborated by 2+ sources
CHRM2(2)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Epilepsy Neurooculocardio-genitourinary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR37(6)
0.004 1.000 1.51e-2 1.67e-2 ✓ sig. —
Connective tissue disease Smith-mccort dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DYM(6)
0.008 0.500 1.51e-2 1.67e-2 ✓ sig. —
Congenital epithelial dysplasia of intestine Pancreatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
EPCAM(2)
0.008 0.500 1.51e-2 1.67e-2 ✓ sig. —
Pancreatic neoplasms Tropical calcific pancreatitis
1 gene
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1 of 1 corroborated by 2+ sources
SPINK1(5)
0.008 0.500 1.51e-2 1.67e-2 ✓ sig. —
Bronchopneumonia Head and neck neoplasms
1 gene
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CBLB(1)
0.019 0.200 1.52e-2 1.68e-2 ✓ sig. —
Birk-landau-perez syndrome Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A9(3)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Branchioskeletogenital syndrome Glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
CDH11(3)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
cardiomyopathy, dilated, 2f Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
BAG5(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. Cluster 69 →
Carnosinemia Diabetic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
CNDP1(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Diabetic neuropathy retinal dystrophy, optic nerve edema, splenomegaly, anhidrosis, and migraine headache syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALPK1(3)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Diabetic neuropathy Sensorineural deafness with renal dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
BSND(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Obsessive-compulsive disorder short chain acyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACADS(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Amaurosis hypertrichosis Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
CNNM4(3)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
amyotrophic lateral sclerosis type 12 Glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(6)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
Glaucoma lessel-kreienkamp syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AGO2(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
methylmalonic acidemia due to transcobalamin receptor defect Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
CD320(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.