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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Colonic neoplasms immunodeficiency 61
1 gene
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1 of 1 corroborated by 2+ sources
SH3KBP1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic cardiac Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
TMEM94(4)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms ITPKB deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ITPKB(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms Erythrocyte lactate transporter defect
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A1(3)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms Fatty acid and ketone body metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms Fatty acid oxidation and ketone body metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms fructose-1,6-bisphosphatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FBP1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Gastroschisis Iga nephropathy
1 gene
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ADD1(1)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Braddock-carey syndrome Iga nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
KIF15(3)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Dermatologic disorder Paraquat lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SKIL(2)
0.014 0.333 1.32e-2 1.47e-2 ✓ sig. —
Chromosomal disorder Vascular disease
1 gene
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COBL(1)
0.018 0.250 1.34e-2 1.50e-2 ✓ sig. —
methylmalonic aciduria and homocystinuria Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
THAP11(3)
0.009 0.500 1.35e-2 1.50e-2 ✓ sig. —
Dopamine beta-hydroxy­lase deficiency Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
HSPA5(2)
0.009 0.500 1.35e-2 1.50e-2 ✓ sig. —
Growth disorder Tessadori-van haaften neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
H4C3(5)
0.024 0.167 1.36e-2 1.51e-2 ✓ sig. Cluster 27 →
Brain ischemia Cystic fibrosis-related diabetes
1 gene
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1 of 1 corroborated by 2+ sources
CEBPB(3)
0.014 0.333 1.36e-2 1.51e-2 ✓ sig. —
Bipolar depression Intellectual developmental disorder seizures speech
1 gene
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NTNG2(1)
0.009 0.500 1.36e-2 1.51e-2 ✓ sig. —
Microcephaly Thiamine metabolism dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.009 0.500 1.37e-2 1.53e-2 ✓ sig. —
Central nervous system malformation Microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
LMNB2(5)
0.009 0.500 1.37e-2 1.53e-2 ✓ sig. —
Diencephalic mesencephalic junction dysplasia Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
GSX2(4)
0.014 0.333 1.38e-2 1.53e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic ptosis Male infertility single gene azoospermia
1 gene
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1 of 1 corroborated by 2+ sources
RPL10L(2)
0.009 0.500 1.39e-2 1.54e-2 ✓ sig. —
Leigh syndrome Sandhoff disease
1 gene
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1 of 1 corroborated by 2+ sources
GFM2(2)
0.009 0.500 1.39e-2 1.54e-2 ✓ sig. Cluster 50 →
Cortical development malformation Spermatogenic failure, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
CFAP47(5)
0.029 0.125 1.39e-2 1.55e-2 ✓ sig. —
Complex regional pain syndrome Sezary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KA1(2)
0.029 0.125 1.39e-2 1.55e-2 ✓ sig. —
Neuronal ceroid lipofuscinosis non-syndromic X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SYP(3)
0.026 0.143 1.40e-2 1.56e-2 ✓ sig. —
ehlers-danlos syndrome, musculocontractural type 1 Gastric cancer
1 gene
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1 of 1 corroborated by 2+ sources
CHST14(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.