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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Optic atrophy retinitis pigmentosa 86
1 gene
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1 of 1 corroborated by 2+ sources
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. Cluster 7 →
Optic atrophy retinitis pigmentosa 9
1 gene
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1 of 1 corroborated by 2+ sources
RP9(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. Cluster 7 →
Optic atrophy Retinitis pigmentosa and erythrocytic microcytosis
1 gene
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1 of 1 corroborated by 2+ sources
TRNT1(5)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Optic atrophy Sideroblastic anemia with b-cell immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRNT1(5)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
autosomal recessive optic atrophy, OPA7 type Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. Cluster 7 →
BBS7-related ciliopathy Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
BBS7(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
microcephaly and chorioretinopathy 1 Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
TUBGCP6(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Costeff optic atrophy syndrome Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
OPA3(7)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
developmental and epileptic encephalopathy, 77 Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
PIGQ(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
dilated cardiomyopathy 2B Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
GATAD1(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
enhanced s-cone syndrome Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
NR2E3(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Intestinal vascular insufficiency Small cell lung carcinoma
1 gene
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NEDD9(1)
0.011 0.500 1.18e-2 1.32e-2 ✓ sig. —
Huntington disease Salt-sensitive hypertension
1 gene
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1 of 1 corroborated by 2+ sources
ADD1(2)
0.016 0.333 1.18e-2 1.33e-2 ✓ sig. —
Pituitary stalk interruption syndrome Renal pelvis neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FANCA(2)
0.027 0.167 1.20e-2 1.35e-2 ✓ sig. —
Amelocerebrohypohidrotic syndrome Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
SLC13A5(4)
0.011 0.500 1.20e-2 1.35e-2 ✓ sig. —
Developmental delay with impaired growth and dysmorphic facies Mitral valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
SPTBN1(5)
0.020 0.250 1.22e-2 1.36e-2 ✓ sig. —
Corticobasal degeneration Progressive supranuclear palsy
1 gene
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1 of 1 corroborated by 2+ sources
MOBP(2)
0.029 0.143 1.22e-2 1.37e-2 ✓ sig. —
Male infertility round headed spermatozoa Teratozoospermia
1 gene
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SPATA16(1)
0.029 0.143 1.22e-2 1.37e-2 ✓ sig. —
Brugada syndrome Lipoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LIPT2(2)
0.015 0.333 1.22e-2 1.37e-2 ✓ sig. —
3-methylcrotonyl-coa carboxylase deficiency Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
MCCC1(5)
0.010 0.500 1.23e-2 1.38e-2 ✓ sig. —
leukodystrophy, hypomyelinating, 22 Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
CLDN11(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
Trident hand Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
NPR2(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
MYSM1(3)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
platelet-type bleeding disorder 15 Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
ACTN1(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —
intellectual developmental disorder 59 Willis-ekbom disease
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2G(2)
0.005 1.000 1.24e-2 1.39e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.