Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Catel-manzke syndrome Hyperopia
1 gene
Show details
1 of 1 corroborated by 2+ sources
KYNU(2)
0.012 0.500 1.02e-2 1.16e-2 ✓ sig. Cluster 386 →
Auditory neuropathy with optic atrophy Hyperopia
1 gene
Show details
1 of 1 corroborated by 2+ sources
GRIN2C(2)
0.012 0.500 1.02e-2 1.16e-2 ✓ sig. —
Periodontitis Shukla-vernon syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
BCORL1(5)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
hypokalemic alkalosis, familial, with specific renal tubulopathy Periodontitis
1 gene
Show details
1 of 1 corroborated by 2+ sources
KCNJ16(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
hypomyelinating leukodystrophy 5 Periodontitis
1 gene
Show details
1 of 1 corroborated by 2+ sources
HYCC1(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
intellectual developmental disorder, autosomal dominant 65 Periodontitis
1 gene
Show details
1 of 1 corroborated by 2+ sources
KDM4B(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
Papillon-lefevre syndrome Periodontitis
1 gene
Show details
1 of 1 corroborated by 2+ sources
CTSC(7)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
Periodontitis platelet-type bleeding disorder 15
1 gene
Show details
1 of 1 corroborated by 2+ sources
ACTN1(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
Periodontitis pycnodysostosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
CTSK(2)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
2-methylbutyryl-coa dehydrogenase deficiency Periodontitis
1 gene
Show details
1 of 1 corroborated by 2+ sources
ACADSB(5)
0.006 1.000 1.03e-2 1.16e-2 ✓ sig. —
Appendiceal disorder Central nervous system cancer
2 genes
Show details
FFAR2(1), KRTDAP(1)
0.003 0.500 1.03e-2 1.16e-2 ✓ sig. —
Dent disease Thyroid disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
INPP5B(2)
0.018 0.333 1.03e-2 1.16e-2 ✓ sig. —
Griscelli syndrome Peripheral nervous system disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
MYO5A(7)
0.018 0.333 1.03e-2 1.16e-2 ✓ sig. —
hypercholesterolemia, familial, 4 Upper aerodigestive tract neoplasm
1 gene
Show details
1 of 1 corroborated by 2+ sources
LDLRAP1(2)
0.006 1.000 1.05e-2 1.18e-2 ✓ sig. —
autosomal recessive cerebellar ataxia Upper aerodigestive tract neoplasm
1 gene
Show details
1 of 1 corroborated by 2+ sources
CWF19L1(2)
0.006 1.000 1.05e-2 1.18e-2 ✓ sig. —
Early onset epilepsy with developmental delay Psoriasis vulgaris
1 gene
Show details
1 of 1 corroborated by 2+ sources
SETD1A(5)
0.018 0.333 1.05e-2 1.18e-2 ✓ sig. —
Kidney cancer Vulto-van silfhout-de vries syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
DLG4(2)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Atrial flutter Wiskott-aldrich syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
WIPF1(6)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Brown-vialetto-van laere syndrome Obstructive sleep apnea syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SLC52A3(6)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Aortic valve disease Carey-fineman-ziter syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
MYMK(6)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Cerebellar, ocular, craniofacial, and genital syndrome Obstructive sleep apnea syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
NBEA(2)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
immunodeficiency, common variable, 6 Sarcoidosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
CD81(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
holocarboxylase synthetase deficiency Sarcoidosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
HLCS(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
glaucoma, normal tension, susceptibility to Sarcoidosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
OPTN(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
amyotrophic lateral sclerosis type 12 Sarcoidosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
OPTN(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.