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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Spastic paraplegia Zhu-tokita-takenouchi-kim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SON(7)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
mucopolysaccharidosis type 1 Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
IDUA(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
neurodegenerative disease Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BPL(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
3-hydroxyisobutyric aciduria Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
HIBADH(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. Cluster 178 →
Alanine-glyoxylate aminotransferase deficiency Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
AGXT(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Allan-herndon-dudley syndrome Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A2(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. Cluster 244 →
ALS2-related motor neuron disease Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
ALS2(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Amr syndrome Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
AHSG(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis renal hypomagnesemia 3
1 gene
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1 of 1 corroborated by 2+ sources
CLDN16(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis renal tubular acidosis, distal, 2, with progressive sensorineural hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Nephrolithiasis retinitis pigmentosa 47
1 gene
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1 of 1 corroborated by 2+ sources
SAG(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Sensory ataxia Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
RNF170(5)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Cataract-neurodevelopmental syndrome Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
FAR1(5)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Chromosome 15q deletion syndrome Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
MCTP2(3)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
Cirrhosis-dystonia-polycythemia-hypermanganesemia syndrome Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
inherited pseudoxanthoma elasticum Nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ABCC6(2)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
kufor-rakeb syndrome Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
ATP13A2(7)
0.008 1.000 7.79e-3 9.07e-3 ✓ sig. —
hermansky-pudlak syndrome 8 Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
BLOC1S3(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Epilepsy due to perinatal stroke Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL3(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
cone-rod dystrophy 20 Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
POC1B(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
CERKL-related retinopathy Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
CERKL(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Cernunnos-XLF deficiency Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
NHEJ1(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Chromosome 12p deletion syndrome Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
ERC1(3)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
Cleft lip and palate, craniofacial dysmorphism, congenital heart defect, hearing loss syndrome Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
HYAL2(3)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
maternal riboflavin deficiency Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A1(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.