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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Microcephaly, epilepsy, and diabetes syndrome Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
IER3IP1(5)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Genetic recurrent myoglobinuria Neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
LPIN1(2)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Lafora disease Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EPM2A(4)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Primary microcephaly-epilepsy-permanent neonatal diabetes syndrome Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
IER3IP1(3)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Bothnia retinal dystrophy Eye disease
1 gene
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1 of 1 corroborated by 2+ sources
RLBP1(6)
0.011 1.000 6.10e-3 7.34e-3 ✓ sig. —
Eye disease retinal dystrophy, optic nerve edema, splenomegaly, anhidrosis, and migraine headache syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALPK1(2)
0.011 1.000 6.10e-3 7.34e-3 ✓ sig. Cluster 399 →
Eye disease RLBP1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RLBP1(3)
0.011 1.000 6.10e-3 7.34e-3 ✓ sig. —
Eye disease Troyer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPART(4)
0.011 1.000 6.10e-3 7.34e-3 ✓ sig. —
Brain cancer Burkitt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
CCT6B(2)
0.042 0.200 6.16e-3 7.40e-3 ✓ sig. —
Brain cancer Periodontal disease
1 gene
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FCHO2(1)
0.042 0.200 6.16e-3 7.40e-3 ✓ sig. —
immunodeficiency 122 Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
POLD3(2)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
2-methylbutyryl-coa dehydrogenase deficiency Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
ACADSB(5)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
Deafness and myopia Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(4)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
HAVCR2-related cancer predisposition Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
HAVCR2(2)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
hereditary sensory and autonomic neuropathy type 4 Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
NTRK1(3)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
hermansky-pudlak syndrome 5 Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
HPS5(2)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
high myopia-sensorineural deafness syndrome Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(2)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
Hypochromic sideroblastic anemia Lewy body disease
1 gene
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1 of 1 corroborated by 2+ sources
STEAP3(6)
0.010 1.000 6.17e-3 7.41e-3 ✓ sig. —
Hydrops fetalis Monomelic amyotrophy
1 gene
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RYR3(1)
0.045 0.167 6.22e-3 7.47e-3 ✓ sig. —
Chromosome 2q37 deletion syndrome Mixed connective tissue disease
1 gene
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1 of 1 corroborated by 2+ sources
HDAC4(5)
0.036 0.250 6.22e-3 7.47e-3 ✓ sig. —
Very long chain acyl-coa dehydrogenase deficiency Williams syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLG4(2)
0.036 0.250 6.22e-3 7.47e-3 ✓ sig. Cluster 60 →
Bifid uvula Neural tube defect
1 gene
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1 of 1 corroborated by 2+ sources
GRHL3(2)
0.020 0.500 6.23e-3 7.48e-3 ✓ sig. —
Acid-base disorder Genetic predisposition to disease
1 gene
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1 of 1 corroborated by 2+ sources
ADH1B(2)
0.020 0.500 6.23e-3 7.48e-3 ✓ sig. —
Albinism Glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
TPCN2(2)
0.010 1.000 6.30e-3 7.56e-3 ✓ sig. —
Antibody deficiency Glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
CD19(2)
0.010 1.000 6.30e-3 7.56e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.