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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Developmental delay with intellectual disability and obesity Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
PHIP(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Early-onset parkinsonism-intellectual disability syndrome Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(7)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Hemorrhoid myopathy, centronuclear, 6, with fiber-type disproportion
1 gene
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1 of 1 corroborated by 2+ sources
MAP3K20(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture neuropathy, hereditary sensory, type 1D
1 gene
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1 of 1 corroborated by 2+ sources
ATL1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Hemorrhoid hereditary mixed polyposis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GREM1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
HMGB1-related brachyphalangy, polydactyly and tibial aplasia syndrome Hyperalgesia
1 gene
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1 of 1 corroborated by 2+ sources
HMGB1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
hsd10 mitochondrial disease Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Hemorrhoid ichthyosiform erythroderma, corneal involvement, and hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
AP1B1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked Parkinsonism with cognitive impairment
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked Parkinsonism with spasticity, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP2(3)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked PHIP-related behavioral problems-intellectual disability-obesity-dysmorphic features syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PHIP(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture macular corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CHST6(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Hemorrhoid MERTK-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
MERTK(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Dupuytren contracture Intellectual developmental disorder hypotonia behavioral
1 gene
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1 of 1 corroborated by 2+ sources
CDK8(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked intellectual disability, X-linked 106
1 gene
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1 of 1 corroborated by 2+ sources
OGT(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. Cluster 115 →
Intellectual developmental disorder, x-linked intellectual disability, X-linked 107
1 gene
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1 of 1 corroborated by 2+ sources
STEEP1(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Hemorrhoid Intestinal dysmotility syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO1(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Brachyphalangy polydactyly tibial aplasia hypoplasia syndrome Hyperalgesia
1 gene
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1 of 1 corroborated by 2+ sources
HMGB1(2)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Congenital heart malformation Semilobar holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FOXH1(3)
0.043 0.200 5.83e-3 7.05e-3 ✓ sig. Cluster 96 →
Dowling degos disease Junctional epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
KRT5(6)
0.043 0.200 5.83e-3 7.05e-3 ✓ sig. —
Cerebellar atrophy Marinesco-sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIL1(6)
0.030 0.333 5.83e-3 7.05e-3 ✓ sig. —
Bronchopulmonary dysplasia Chromosome 16p11.2 deletion syndrome
1 gene
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SFTPA1(1)
0.021 0.500 5.84e-3 7.05e-3 ✓ sig. —
Fetal erythroblastosis Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
FCGR2A(2)
0.021 0.500 5.84e-3 7.05e-3 ✓ sig. Cluster 55 →
Non-immune hydrops fetalis Noonan syndrome-like disorder with loose anagen hair
1 gene
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1 of 1 corroborated by 2+ sources
SHOC2(2)
0.021 0.500 5.84e-3 7.05e-3 ✓ sig. Cluster 42 →
Gestational diabetes Neuralgic amyotrophy
1 gene
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1 of 1 corroborated by 2+ sources
SEPTIN9(4)
0.011 1.000 5.84e-3 7.05e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.