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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hypertrophic neuropathy Lysine metabolism disorder
1 gene
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DHTKD1(1)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Lysine metabolism disorder Roussy-levy syndrome
1 gene
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DHTKD1(1)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Cutaneous squamous cell carcinoma methylmalonic aciduria and homocystinuria
1 gene
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1 of 1 corroborated by 2+ sources
ZNF143(2)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Dermatitis Microscopic colitis
1 gene
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CLEC16A(1)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Brain neoplasms Conjunctival disease
1 gene
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1 of 1 corroborated by 2+ sources
DAPK1(2)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Corpus callosum agenesis neuronopathy syndrome Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A6(3)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Corpus callosum agenesis neuronopathy syndrome Hypertrophic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A6(3)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Corpus callosum agenesis neuronopathy syndrome Roussy-levy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A6(3)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Microphthalmia Oculoauricular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HMX1(7)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Dejerine-sottas disease Odontochondrodysplasia 2 with hearing loss and diabetes
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG5(3)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Agenesis of corpus callosum Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A6(2)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Cone dystrophy Cone-rod synaptic disorder
1 gene
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1 of 1 corroborated by 2+ sources
CABP4(4)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Congenital alpha-2-antiplasmin deficiency Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Congenital central hypothyroidism Intellectual disability
1 gene
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TRHR(1)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Congenital microtia Inflammatory skin disease
1 gene
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1 of 1 corroborated by 2+ sources
PRKRA(3)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Congenital plasmin inhibitor deficiency Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Cranio-cervical dystonia Inflammatory skin disease
1 gene
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1 of 1 corroborated by 2+ sources
ANO3(3)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Dorfman-chanarin disease Inflammatory skin disease
1 gene
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1 of 1 corroborated by 2+ sources
ABHD5(3)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Dosage-sensitive sex reversal Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
NR0B1(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
ectodermal dysplasia 12, hypohidrotic/hair/tooth/nail type Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
KDF1(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Epilepsy due to perinatal stroke Intellectual disability
1 gene
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ST3GAL3(1)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Baralle-macken syndrome Intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
COPB1(4)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Hydrops with lactic acidosis and sideroblastic anemia Inflammatory skin disease
1 gene
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1 of 1 corroborated by 2+ sources
LARS2(6)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Hyperekplexia epilepsy syndrome Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(3)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Hypertension and brachydactyly syndrome Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
PDE3A(2)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.