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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
X-linked intellectual disability X-linked intellectual disability, Cabezas type
1 gene
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1 of 1 corroborated by 2+ sources
CUL4B(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
X-linked intellectual disability X-linked myopathy with excessive autophagy
1 gene
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1 of 1 corroborated by 2+ sources
RPL10(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
X-linked intellectual disability X-linked parkinsonism-spasticity syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP2(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
X-linked intellectual disability X-linked reticulate pigmentary disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLA1(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy X-linked retinitis pigmentosa
1 gene
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RP2(1)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Esophageal neoplasms Ziegler-huang syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A7(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
CERKL-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CERKL(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →
CNGA1-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CNGA1(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →
CNGA3-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CNGA3(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Aarskog-scott syndrome, x-linked X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
FGD1(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Acyl-coa binding domain containing protein 5 deficiency Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →
ADAM9-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ADAM9(6)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy IMPG2-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG2(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
intellectual disability, X-linked 107 X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
STEEP1(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
CACNA2D4-related retinopathy Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Hyperekplexia epilepsy syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
ATP6AP2-related disorder X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP2(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Axial spondylometaphyseal dysplasia Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CFAP410(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Paraplegia Rotator cuff tear
1 gene
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SAP30BP(1)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. —
Oculopharyngodistal myopathy Tremor
1 gene
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1 of 1 corroborated by 2+ sources
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. —
Diabetic foot Polymorphic catecholaminergic ventricular tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
TRDN(2)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. —
Congenital heart malformation Syntelencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FOXH1(3)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. Cluster 96 →
Congenital heart malformation Septopreoptic holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FOXH1(3)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. Cluster 96 →
Iminoglycinuria Macular telangiectasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A20(4)
0.050 0.200 4.86e-3 5.99e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic facial Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
SETD5(3)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.