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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cone-rod dystrophy RP2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP2(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Say meyer syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
HUWE1(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy short-rib thoracic dysplasia 19 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT81(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
syndromic X-linked intellectual disability Nascimento type X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
UBE2A(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
syndromic X-linked intellectual disability Raymond type X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ZDHHC9(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
syndromic X-linked intellectual disability Siderius type X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
PHF8(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
syndromic X-linked intellectual disability Snyder type X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SMS(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Parkinsonism with cognitive impairment X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Parkinsonism with spasticity, x-linked X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP2(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy PCARE-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PCARE(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →
Cone-rod dystrophy PDE6C-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PDE6C(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy RAB28-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RAB28(7)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →
Cone-rod dystrophy red color blindness
1 gene
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1 of 1 corroborated by 2+ sources
OPN1LW(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
colorectal cancer, hereditary nonpolyposis, type 7 Esophageal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
MLH3(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
cone dystrophy 3 Cone-rod dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GUCA1A(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy cone-rod dystrophy 20
1 gene
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1 of 1 corroborated by 2+ sources
POC1B(7)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy TTLL5-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TTLL5(6)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Van esch-o’driscoll syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
POLA1(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Waisman syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Esophageal neoplasms Winchester syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MMP14(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
X-linked creatine transporter deficiency X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A8(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
X-linked dystonia-parkinsonism X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
TAF1(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
X-linked female restricted facial dysmorphism, short stature, choanal atresia, intellectual disability X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
USP9X(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
X-linked immunodeficiency with magnesium defect, epstein-barr virus infection and neoplasia X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
MAGT1(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
X-linked intellectual disability X-linked intellectual disability-cerebellar hypoplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OPHN1(6)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.