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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Motor neuron disease severe combined immunodeficiency due to LAT deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LAT(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Ciliopathy short-rib thoracic dysplasia 19 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT81(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Motor neuron disease T-B+ severe combined immunodeficiency due to JAK3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
JAK3(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Corneal astigmatism temtamy preaxial brachydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHSY1(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Cerebral amyloid angiopathy Uridine-cytidineuria
1 gene
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1 of 1 corroborated by 2+ sources
SLC28A1(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Ciliopathy Yuksel-vogel-bauer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLG5(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
PHIP-related behavioral problems-intellectual disability-obesity-dysmorphic features syndrome Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PHIP(4)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Cerebral amyloid angiopathy leukodystrophy, adult-onset, autosomal dominant, without amyloid angiopathy
1 gene
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1 of 1 corroborated by 2+ sources
CST3(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
leukodystrophy, adult-onset, autosomal dominant, without amyloid angiopathy Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
CST3(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Ciliopathy LZTFL1-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
LZTFL1(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
Ciliopathy microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
KIF11(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Cerebral amyloid angiopathy Familial danish dementia
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
glaucoma, normal tension, susceptibility to Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Corneal astigmatism neurodevelopmental disorder, nonprogressive, with spasticity and transient opisthotonus
1 gene
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1 of 1 corroborated by 2+ sources
TNR(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 240 →
Ciliopathy Heart defect, tongue hamartoma and polysyndactyly
1 gene
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1 of 1 corroborated by 2+ sources
WDPCP(6)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
Corneal astigmatism hermansky-pudlak syndrome 7
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Congenital posterior urethral valves Corneal astigmatism
1 gene
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1 of 1 corroborated by 2+ sources
BNC2(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Corneal astigmatism Deeah syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MADD(4)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 240 →
CEP164-related ciliopathy Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
CEP164(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
Charcot-Marie-Tooth disease axonal type 2CC Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
NEFH(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Chung-jansen syndrome Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PHIP(4)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Autoinflammatory syndrome, familial, behcet-like Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TNFAIP3(5)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 25 →
autosomal recessive osteopetrosis 3 Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CA2(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Axial spondylometaphyseal dysplasia Ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
CFAP410(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Barber-say syndrome Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(7)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.