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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Danon disease Status epilepticus
1 gene
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1 of 1 corroborated by 2+ sources
LAMP2(6)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Developmental delay with overweight and facial dysmorphism Status epilepticus
1 gene
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1 of 1 corroborated by 2+ sources
SRRM2(2)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. Cluster 114 →
Dubin-johnson syndrome Status epilepticus
1 gene
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1 of 1 corroborated by 2+ sources
ABCC2(6)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Early-onset spastic ataxia-myoclonic epilepsy-neuropathy syndrome Spastic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(6)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Bosley-salih-alorainy syndrome Congenital heart defects
1 gene
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1 of 1 corroborated by 2+ sources
HOXA1(3)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Brain abnormalities developmental delay facial dysmorphism intellectual disability syndrome Status epilepticus
1 gene
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1 of 1 corroborated by 2+ sources
MEF2C(3)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Acrokeratosis verruciformis Status epilepticus
1 gene
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1 of 1 corroborated by 2+ sources
ATP2A2(3)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
AFG3L2-related optic atrophy and/or spastic ataxia spectrum Spastic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(6)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Alpha-methylacyl-coa racemase deficiency Spastic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
AMACR(3)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Congenital heart defects H syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC29A3(2)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Congenital heart defects HAND2 related congenital heart defect
1 gene
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1 of 1 corroborated by 2+ sources
HAND2(3)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
hereditary spastic paraplegia 11 Spastic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
SPG11(2)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
hereditary spastic paraplegia 35 Spastic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
FA2H(2)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
hypomyelinating leukodystrophy 2 Spastic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
GJC2(2)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Hypersensitivity immunodeficiency 63 with lymphoproliferation and autoimmunity
1 gene
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1 of 1 corroborated by 2+ sources
IL2RB(2)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Brain ischemia inflammatory bowel disease 25
1 gene
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1 of 1 corroborated by 2+ sources
IL10RB(3)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Congenital heart defects Intellectual developmental disorder hypotonia behavioral
1 gene
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1 of 1 corroborated by 2+ sources
CDK8(4)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Intellectual developmental disorder hypotonia spastic sleep Status epilepticus
1 gene
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1 of 1 corroborated by 2+ sources
ANK3(4)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Cerebral amyloid angiopathy immunodeficiency 122
1 gene
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1 of 1 corroborated by 2+ sources
POLD3(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Cerebral amyloid angiopathy immunodeficiency 53
1 gene
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1 of 1 corroborated by 2+ sources
RELB(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Ciliopathy cone-rod dystrophy 20
1 gene
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1 of 1 corroborated by 2+ sources
POC1B(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Ciliopathy Congenital cerebral hernia
1 gene
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1 of 1 corroborated by 2+ sources
PIBF1(3)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →
Congenital ectodermal dysplasia of face Sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Corneal astigmatism renal dysplasia, cystic, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
BICC1(2)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. —
Ciliopathy Retinitis pigmentosa with or without situs inversus
1 gene
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1 of 1 corroborated by 2+ sources
ARL2BP(5)
0.014 1.000 4.61e-3 5.73e-3 ✓ sig. Cluster 8 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.