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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Coralliform cataract Hepatomegaly
1 gene
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1 of 1 corroborated by 2+ sources
CRYGD(4)
0.017 1.000 3.77e-3 4.81e-3 ✓ sig. —
Craniosynostosis craniosynostosis 2
1 gene
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1 of 1 corroborated by 2+ sources
MSX2(7)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Craniosynostosis craniosynostosis 6
1 gene
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1 of 1 corroborated by 2+ sources
ZIC1(6)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Craniosynostosis craniosynostosis and dental anomalies
1 gene
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1 of 1 corroborated by 2+ sources
IL11RA(7)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 63 →
Craniosynostosis Trident hand
1 gene
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NPR2(1)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Bardet-biedl syndrome TTC8-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
TTC8(8)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Craniosynostosis Turricephaly
1 gene
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1 of 1 corroborated by 2+ sources
ZIC1(6)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Craniosynostosis Weiss-kruszka syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZNF462(6)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 63 →
Bardet-biedl syndrome Sarcotubular myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TRIM32(7)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Alpha-mannosidosis Craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
MAN2B1(4)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Alstrom syndrome Bardet-biedl syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALMS1(3)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Craniosynostosis Nasodigitoacoustic syndrome
1 gene
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GPC4(1)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Bardet-biedl syndrome nephronophthisis 4
1 gene
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1 of 1 corroborated by 2+ sources
NPHP4(2)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 8 →
Craniosynostosis oligodontia-cancer predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AXIN2(3)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 63 →
Craniosynostosis Opitz g/bbb syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPECC1L(2)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Craniosynostosis lethal occipital encephalocele-skeletal dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CYP26B1(2)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Bardet-biedl syndrome LZTFL1-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
LZTFL1(7)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 8 →
Craniosynostosis MEGF8-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MEGF8(2)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Bardet-biedl syndrome MKKS-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
MKKS(8)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 8 →
Bardet-biedl syndrome Heart defect, tongue hamartoma and polysyndactyly
1 gene
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1 of 1 corroborated by 2+ sources
WDPCP(7)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 8 →
Bardet-biedl syndrome bardet-biedl syndrome 11
1 gene
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1 of 1 corroborated by 2+ sources
TRIM32(7)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Bardet-biedl syndrome BBS1-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS1(8)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 8 →
Bardet-biedl syndrome BBS10-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS10(8)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. —
Bardet-biedl syndrome BBS12-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS12(7)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 8 →
Bardet-biedl syndrome BBS2-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
BBS2(8)
0.017 1.000 3.83e-3 4.88e-3 ✓ sig. Cluster 8 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.