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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Corneal disease Corneal edema
1 gene
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TCF4(1)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. Cluster 222 →
Corneal edema Paranoia
1 gene
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1 of 1 corroborated by 2+ sources
TCF4(2)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. Cluster 222 →
Developmental disorder Wheat allergic reaction
1 gene
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RBFOX1(1)
0.053 0.333 3.11e-3 4.10e-3 ✓ sig. —
Hydrops fetalis Insulin dependent diabetes mellitus secretory diarrhea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXP3(2)
0.053 0.333 3.11e-3 4.10e-3 ✓ sig. —
Lymphedema Malignant glioma
1 gene
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PAX7(1)
0.053 0.333 3.11e-3 4.10e-3 ✓ sig. —
Mitochondrial encephalomyopathy Mitochondrial encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
FOXRED1(2)
0.053 0.333 3.11e-3 4.10e-3 ✓ sig. —
Advanced sleep phase syndrome Seasonal affective disorder
1 gene
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1 of 1 corroborated by 2+ sources
PER3(2)
0.053 0.333 3.11e-3 4.10e-3 ✓ sig. —
Angiocentric glioma Deficiency anemia
1 gene
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1 of 1 corroborated by 2+ sources
MYB(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Curry-hall syndrome Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EVC2(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Cardiac, facial, and digital anomalies with developmental delay Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
MEIS2(3)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Blood coagulation disorder Peeling skin syndrome with leukonychia and acral punctate keratoses
1 gene
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1 of 1 corroborated by 2+ sources
CAST(7)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Periventricular leukomalacia Uterine polyp
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG1(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Peroxisome biogenesis disorder Refsum disease
1 gene
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1 of 1 corroborated by 2+ sources
PEX7(6)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Hyperaldosteronism Intellectual developmental disorder seizures extrapyramidal
1 gene
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1 of 1 corroborated by 2+ sources
SATB1(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Lafora disease Progressive myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NHLRC1(4)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. Cluster 329 →
Central nervous system malformation Progressive myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
LMNB2(5)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Chromosome 2q32-q33 deletion syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(3)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Vulto-van silfhout-de vries syndrome Williams syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLG4(2)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. Cluster 60 →
Ovarian hyperstimulation syndrome Transient ischemic attack
1 gene
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0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
nephronophthisis 16 Polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
ANKS6(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Neural tube defect neurodegenerative syndrome due to cerebral folate transport deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FOLR1(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Endometrioid carcinoma Genetic predisposition to disease
1 gene
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MSLN(1)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
ALG9-associated autosomal dominant polycystic kidney disease Polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
ALG9(6)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 23 →
frontorhiny Neural tube defect
1 gene
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1 of 1 corroborated by 2+ sources
ALX3(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
GRHL3-related orofacial clefting Neural tube defect
1 gene
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1 of 1 corroborated by 2+ sources
GRHL3(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.