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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Polydactyly renal tubular acidosis, distal, 2, with progressive sensorineural hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Osteogenesis imperfecta Respiratory distress with surfactant metabolism deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(3)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Osteonecrosis Retinitis pigmentosa with or without skeletal anomalies
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. Cluster 373 →
Osteogenesis imperfecta SFTPC-related interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Osteonecrosis skeletal dysplasia, mild, with joint laxity and advanced bone age
1 gene
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1 of 1 corroborated by 2+ sources
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Brachydactyly-short stature-retinits pigmentosa syndrome Osteonecrosis
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(3)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. Cluster 373 →
Patterson stevenson fontaine syndrome Polydactyly
1 gene
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LMBR1(1)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia RAD51C-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
RAD51C(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
immunodeficiency 60 Nasal polyp
1 gene
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1 of 1 corroborated by 2+ sources
BACH2(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Bladder calculus inherited pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
ABCC6(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
isolated sulfite oxidase deficiency Nasal polyp
1 gene
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1 of 1 corroborated by 2+ sources
SUOX(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
joubert syndrome 17 Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
CPLANE1(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Bladder calculus koolen-de vries syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANSL1(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
leber congenital amaurosis 15 Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
TULP1(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
17q21.31 microdeletion syndrome Bladder calculus
1 gene
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1 of 1 corroborated by 2+ sources
KANSL1(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Acheiropody Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
LMBR1(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2P Peroneal muscle atrophy
1 gene
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1 of 1 corroborated by 2+ sources
LRSAM1(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 4B3 Peroneal muscle atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SBF1(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. Cluster 15 →
Bladder calculus Cirrhosis-dystonia-polycythemia-hypermanganesemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
BBS10-related ciliopathy Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
BBS10(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
BBS12-related ciliopathy Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
BBS12(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. Cluster 8 →
Congenital hemivertebra Spondylocostal dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
DLL3(5)
0.077 0.200 2.60e-3 3.51e-3 ✓ sig. —
Alcoholic hepatitis Chondromalacia
1 gene
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1 of 1 corroborated by 2+ sources
SULT1E1(2)
0.077 0.200 2.60e-3 3.51e-3 ✓ sig. Cluster 76 →
Frontotemporal dementia with motor neuron disease Paget disease
1 gene
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1 of 1 corroborated by 2+ sources
SQSTM1(5)
0.077 0.200 2.60e-3 3.51e-3 ✓ sig. —
Congenital hemivertebra Jarcho-levin syndrome
1 gene
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DLL3(1)
0.077 0.200 2.60e-3 3.51e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.