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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
PROM1-related dominant retinopathy Uterine neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PROM1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
PROM1-related recessive retinopathy Uterine neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PROM1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Cone dystrophy RAB28-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RAB28(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 7 →
Heart defect, tongue hamartoma and polysyndactyly Vesicoureteral reflux
1 gene
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1 of 1 corroborated by 2+ sources
WDPCP(5)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Autoimmune hepatitis hereditary fructose intolerance
1 gene
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1 of 1 corroborated by 2+ sources
ALDOB(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Cutaneous squamous cell carcinoma histidinemia
1 gene
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1 of 1 corroborated by 2+ sources
HAL(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 29 →
Hypo-akinesia disorder of prenatal onset Myasthenia gravis
1 gene
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1 of 1 corroborated by 2+ sources
CHRNG(4)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
hypogonadotropic hypogonadism 4 with or without anosmia Kallmann syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PROK2(5)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 54 →
hypotonia, ataxia, and delayed development syndrome Vesicoureteral reflux
1 gene
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1 of 1 corroborated by 2+ sources
EBF3(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 323 →
Dermatitis Ichthyosis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
FLG(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
CERKL-related retinopathy Cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CERKL(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 7 →
Cernunnos-XLF deficiency Microphthalmia
1 gene
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1 of 1 corroborated by 2+ sources
NHEJ1(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2P Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
LRSAM1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease axonal type 2P Hypertrophic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
LRSAM1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease axonal type 2P Roussy-levy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRSAM1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 2A1 Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
KIF1B(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 2D Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
GARS1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 2T Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
MME(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 2T Hypertrophic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
MME(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4 Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
PRX(4)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4 Hypertrophic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PRX(3)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4B3 Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
SBF1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 4B3 Hypertrophic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
SBF1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 4B3 Roussy-levy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SBF1(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 4C Dejerine-sottas disease
1 gene
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1 of 1 corroborated by 2+ sources
SH3TC2(2)
0.026 1.000 2.47e-3 3.37e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.