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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Autoinflammatory syndrome lysinuric protein intolerance
1 gene
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1 of 1 corroborated by 2+ sources
SLC7A7(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Autoinflammatory syndrome Majeed syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LPIN2(6)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Duodenal ulcer MECOM-associated syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MECOM(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Autoinflammatory syndrome methylmalonic aciduria, cblb type
1 gene
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1 of 1 corroborated by 2+ sources
MMAB(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Autoinflammatory syndrome mucopolysaccharidosis type 3A
1 gene
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1 of 1 corroborated by 2+ sources
SGSH(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Atypical femoral fracture mucopolysaccharidosis type 4A
1 gene
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1 of 1 corroborated by 2+ sources
GALNS(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
cone-rod dystrophy 2 Retinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
CRX(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 7 →
Congenital merosin-deficient muscular dystrophy Toxic epidermal necrolysis
1 gene
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1 of 1 corroborated by 2+ sources
LAMA2(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
ASAH1-related sphingolipidosis Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(6)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Ataxia-pancytopenia syndrome Autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SAMD9L(5)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Autoinflammatory syndrome Autoinflammatory syndrome with cytopenia, hyperzincemia, and hypercalprotectinemia
1 gene
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1 of 1 corroborated by 2+ sources
PSTPIP1(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Autoinflammatory syndrome Autoinflammatory syndrome, familial, behcet-like
1 gene
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1 of 1 corroborated by 2+ sources
TNFAIP3(5)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
autosomal dominant slowed nerve conduction velocity Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Seborrheic dermatitis Tyrosine kinase 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TYK2(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Retinal degeneration Uridine-cytidineuria
1 gene
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1 of 1 corroborated by 2+ sources
SLC28A1(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 7 →
Spinal muscular atrophy Vexas syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBA1(4)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 15 →
Autoinflammatory syndrome Von zumbuzschs disease
1 gene
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IL36RN(1)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
nephrotic syndrome 14 Seborrheic dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
SGPL1(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 162 →
nephrotic syndrome, type 3 Retinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
PLCE1(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
netherton syndrome Seborrheic dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
SPINK5(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 162 →
neuronopathy, distal hereditary motor, autosomal recessive 5 Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
DNAJB2(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. Cluster 15 →
NMNAT1-related retinopathy Retinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
NMNAT1(2)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Cleft lip Otodental dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGF3(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
Dicarboxylic aminoaciduria Retinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A1(7)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —
dilated cardiomyopathy 1D Glycogen storage disease
1 gene
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1 of 1 corroborated by 2+ sources
TNNT2(3)
0.026 1.000 2.40e-3 3.31e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.