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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Benign prostatic hyperplasia Cerebellar vermis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYN3(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Chops syndrome Growth disorder
1 gene
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1 of 1 corroborated by 2+ sources
AFF4(3)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Cognitive impairment-coarse facies-heart defects-obesity-pulmonary involvement-short stature-skeletal dysplasia syndrome Growth disorder
1 gene
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1 of 1 corroborated by 2+ sources
AFF4(4)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Female restricted epilepsy with intellectual disability X-linked complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
PCDH19(3)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
frank-ter haar syndrome Growth disorder
1 gene
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1 of 1 corroborated by 2+ sources
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Atrial septal defect holt-oram syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX5(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Hyperekplexia epilepsy syndrome X-linked complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(4)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. Cluster 115 →
microcephaly 2, primary, autosomal recessive, with or without cortical malformations Primary microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
WDR62(4)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
microcephaly 26, primary, autosomal dominant Primary microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
LMNB1(4)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
microcephaly with intellectual disability Primary microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
MCPH1(4)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
microcephaly with or without short stature Primary microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
CEP152(4)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. Cluster 101 →
Growth disorder mosaic variegated aneuploidy syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
BUB1B(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Primary microcephaly Trichiasis
1 gene
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1 of 1 corroborated by 2+ sources
MCM7(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Esophageal adenocarcinoma Ulnar-fibular ray defect and brachydactyly
1 gene
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1 of 1 corroborated by 2+ sources
RP1L1(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Benign prostatic hyperplasia Ulnar-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX3(7)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Benign prostatic hyperplasia Uterine benign neoplasm
1 gene
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BET1L(1)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. Cluster 37 →
Ovarian cysts Vesiculobullous skin disease
1 gene
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1 of 1 corroborated by 2+ sources
PRKN(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
X-linked complex neurodevelopmental disorder X-linked epilepsy with learning disability and behavior disorder syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
X-linked complex neurodevelopmental disorder X-linked epilepsy with variable learning disabilities and behavior disorders
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(5)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
X-linked complex neurodevelopmental disorder X-linked epilepsy-learning disabilities-behavior disorders syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(3)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay Diabetic ketoacidosis
1 gene
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1 of 1 corroborated by 2+ sources
PBX1(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Congenital hypotrichosis with juvenile macular dystrophy Ovarian cysts
1 gene
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1 of 1 corroborated by 2+ sources
CDH3(3)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Benign prostatic hyperplasia Coronary vessel anomalies
1 gene
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1 of 1 corroborated by 2+ sources
GCLC(3)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Cousin syndrome Growth disorder
1 gene
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1 of 1 corroborated by 2+ sources
TBX15(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Demyelinating leukodystrophy Primary microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
LMNB1(4)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.