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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cornea plana Corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
KERA(5)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Coronary aneurysm Intellectual developmental disorder expressive speech dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 271 →
Coronary aneurysm Schinzel-Giedion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 271 →
Coronary aneurysm Palmoplantar keratoderma with congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
GJA1(5)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Curly hair ankyloblepharon nail dysplasia syndrome Ectodermal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
RIPK4(3)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Ectodermal dysplasia Schopf-schulz-passarge syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WNT10A(4)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Ectodermal dysplasia Sebaceous gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
LEF1(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Ectodermal dysplasia Sebocystomatosis
1 gene
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1 of 1 corroborated by 2+ sources
KRT17(3)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Aplastic anemia Severe neonatal spondylometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SBDS(4)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Aplastic anemia Short telomere syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACD(4)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 64 →
Shukla-vernon syndrome Wilms tumor
1 gene
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1 of 1 corroborated by 2+ sources
BCORL1(5)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 35 →
Thrombomodulin-related bleeding disorder Thrombophilia
1 gene
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1 of 1 corroborated by 2+ sources
THBD(7)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 55 →
Thrombophilia thrombophilia, X-linked, due to factor 9 defect
1 gene
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1 of 1 corroborated by 2+ sources
F9(6)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Orofaciodigital syndrome TOPORS-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TOPORS(3)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Polyarticular juvenile idiopathic arthritis Tyrosine kinase 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TYK2(3)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Aplastic anemia Van esch-o’driscoll syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLA1(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Aplastic anemia White blood cell count quantitative trait locus
1 gene
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1 of 1 corroborated by 2+ sources
ACKR1(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 64 →
Aplastic anemia X-linked reticulate pigmentary disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLA1(5)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Central serous retinopathy Throat disease
1 gene
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GATA5(1)
0.071 0.333 2.14e-3 3.04e-3 ✓ sig. Cluster 107 →
Central precocious puberty Estrogen resistance
1 gene
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1 of 1 corroborated by 2+ sources
ESR1(6)
0.071 0.333 2.14e-3 3.04e-3 ✓ sig. —
Cleidocranial dysplasia Diffuse idiopathic skeletal hyperostosis
1 gene
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1 of 1 corroborated by 2+ sources
SUPT3H(2)
0.071 0.333 2.14e-3 3.04e-3 ✓ sig. —
Hyperphosphatasia with intellectual disability syndrome Intellectual developmental disorder dysmorphic facial
1 gene
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1 of 1 corroborated by 2+ sources
SETD5(3)
0.071 0.333 2.14e-3 3.04e-3 ✓ sig. Cluster 337 →
Heparin cofactor 2 deficiency Post-operative acute kidney injury
1 gene
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1 of 1 corroborated by 2+ sources
EIF4G3(2)
0.071 0.333 2.14e-3 3.04e-3 ✓ sig. —
Activated pi3k-delta syndrome Diffuse idiopathic skeletal hyperostosis
1 gene
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1 of 1 corroborated by 2+ sources
PIK3R1(2)
0.071 0.333 2.14e-3 3.04e-3 ✓ sig. —
Concentric hypertrophic cardiomyopathy Short qt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1C(3)
0.071 0.333 2.14e-3 3.04e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.