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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Endometrioid carcinoma Lymphatic metastasis
1 gene
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MSLN(1)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Epilepsy due to perinatal stroke West syndrome
1 gene
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ST3GAL3(1)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 328 →
Hypomyelinating leukodystrophy leukodystrophy, hypomyelinating, 14
1 gene
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1 of 1 corroborated by 2+ sources
UFM1(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 100 →
Hypomyelinating leukodystrophy leukodystrophy, hypomyelinating, 16
1 gene
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1 of 1 corroborated by 2+ sources
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy leukodystrophy, hypomyelinating, 17
1 gene
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1 of 1 corroborated by 2+ sources
AIMP2(4)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 100 →
Hypomyelinating leukodystrophy leukodystrophy, hypomyelinating, 18
1 gene
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1 of 1 corroborated by 2+ sources
DEGS1(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 100 →
Hypomyelinating leukodystrophy leukodystrophy, hypomyelinating, 21
1 gene
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1 of 1 corroborated by 2+ sources
POLR3K(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 100 →
Hypomyelinating leukodystrophy leukodystrophy, hypomyelinating, 22
1 gene
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1 of 1 corroborated by 2+ sources
CLDN11(4)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 100 →
Hypomyelinating leukodystrophy leukodystrophy, hypomyelinating, 25
1 gene
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1 of 1 corroborated by 2+ sources
TMEM163(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Cerebellar atrophy microcephaly, seizures, and developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
PNKP(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Mucosulfatidosis Spondylosis
1 gene
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1 of 1 corroborated by 2+ sources
SUMF1(3)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Axonal hereditary motor and sensory neuropathy Multiple system atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 207 →
multiple symmetric lipomatosis with partial lipodystrophy Multiple system atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 207 →
Charcot-Marie-Tooth disease type 2A2 Multiple system atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 207 →
Multiple system atrophy nail-patella syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LMX1B(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Cerebellar atrophy hereditary spastic paraplegia 35
1 gene
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1 of 1 corroborated by 2+ sources
FA2H(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
hypercholesterolemia, autosomal dominant, 3 Lipoprotein lipase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PCSK9(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
hypercholesterolemia, familial, 1 Lipoprotein lipase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LDLR(2)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy POLR3B-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3B(6)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 13
1 gene
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1 of 1 corroborated by 2+ sources
HIKESHI(6)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 2
1 gene
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1 of 1 corroborated by 2+ sources
GJC2(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 3
1 gene
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1 of 1 corroborated by 2+ sources
AIMP1(4)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 5
1 gene
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1 of 1 corroborated by 2+ sources
HYCC1(4)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 100 →
Hypomyelinating leukodystrophy hypomyelinating leukodystrophy 9
1 gene
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1 of 1 corroborated by 2+ sources
RARS1(5)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 100 →
Caudate atrophy Cerebellar atrophy
1 gene
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TYROBP(1)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.