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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Anterior pituitary function deficiency with variable immunodeficiency Developmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
NFKB2(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Developmental disorder Riddle syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RNF168(7)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Developmental disorder immunodeficiency, common variable, 10
1 gene
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1 of 1 corroborated by 2+ sources
NFKB2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Diffuse gastric adenocarcinoma severe combined immunodeficiency due to LAT deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LAT(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 265 →
Congenital fibrosis of extraocular muscles Diffuse gastric and lobular breast cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTNNA1(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Disorder of sex development Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
RXFP2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 143 →
Body weight dyskeratosis congenita, autosomal recessive 3
1 gene
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1 of 1 corroborated by 2+ sources
WRAP53(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dyskinesia, limb and orofacial, infantile-onset Thyroiditis
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
ectodermal dysplasia and immunodeficiency 2 Gliosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
NFKBIA(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dentinogenesis imperfecta Enamel-renal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FAM20A(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 366 →
Encephaloclastic proliferative vasculopathy Hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Gliosarcoma P450 oxidoreductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
POR(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Congenital total cataract Palmoplantar keratoderma and congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Distal arthrogryposis papillary renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MET(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Lymphedema papillary renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MET(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Distal arthrogryposis Perching syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KLHL7(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dental enamel hypoplasia Peripheral neuropathy myopathy hoarseness hearing loss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH14(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dental enamel hypoplasia Peripheral neuropathy, myopathy, hoarseness, and hearing
1 gene
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1 of 1 corroborated by 2+ sources
MYH14(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Peters plus syndrome Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
B3GLCT(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 143 →
Distal arthrogryposis peutz-jeghers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STK11(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Coronary stenosis PLD1-related congenital heart disease
1 gene
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1 of 1 corroborated by 2+ sources
PLD1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Pheochromocytoma Polydactyly-macrocephaly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MAX(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 81 →
Developmental delay with autism spectrum disorder Primary angle closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
HERC2(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Primary aldosteronism Primary hyperaldosteronism-seizures-neurological abnormalities syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1D(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
progressive pseudorheumatoid arthropathy of childhood Pulmonary edema
1 gene
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1 of 1 corroborated by 2+ sources
CCN6(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.