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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Deafness-lymphedema-leukemia syndrome Primary graft dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 136 →
Delta zero thalassemia Delta-beta thalassemia
1 gene
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1 of 1 corroborated by 2+ sources
HBD(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Delta-sarcoglycan-related limb-girdle muscular dystrophy r6 Salivary gland disease
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Delta-beta thalassemia Delta-thalassemia
1 gene
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1 of 1 corroborated by 2+ sources
HBD(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Dermatopathia pigmentosa reticularis Weber-cockayne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRT14(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 269 →
17q23.1q23.2 microdeletion syndrome Tetra-amelia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 24 →
Amelia Tetra-amelia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 24 →
Chromosome 17q23.1-q23.2 duplication syndrome Tetra-amelia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 24 →
Coxopodopatellar syndrome Tetra-amelia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 24 →
Ischiocoxopodopatellar syndrome with pulmonary arterial hypertension Tetra-amelia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 24 →
Mandibuloacral dysplasia Tight skin contracture syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 65 →
Cleft lip and cleft of alveolar process of maxilla tooth agenesis, selective, 1
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cleft lip and cleft of alveolar process of maxilla Tooth and nail syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
TUBB3-related tubulinopathy Tubulinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TUBB3(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Congenital benign spinal muscular atrophy Urination disorders
1 gene
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1 of 1 corroborated by 2+ sources
TRPV4(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 215 →
Brachyrachia Urination disorders
1 gene
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1 of 1 corroborated by 2+ sources
TRPV4(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 215 →
Digital arthropathy-brachydactyly, familial Urination disorders
1 gene
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1 of 1 corroborated by 2+ sources
TRPV4(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 215 →
Parastremmatic dwarfism Urination disorders
1 gene
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1 of 1 corroborated by 2+ sources
TRPV4(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 215 →
Scapuloperoneal spinal muscular atrophy Urination disorders
1 gene
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1 of 1 corroborated by 2+ sources
TRPV4(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 215 →
Bilateral multicystic dysplastic kidney Uterine cancer
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 23 →
Renal dysplasia Uterine cancer
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 23 →
Giant cell tumor of tendon sheath Uterine cancer
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 23 →
Multicystic dysplastic kidney Uterine cancer
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 23 →
Urination disorders Vitamin e deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TTPA(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Waardenburg syndrome type 2 Waardenburg-shah syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MITF(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 229 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.